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Old 05-07-2015, 10:25 AM   #1
andy
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Default US H5N2

This article is about the attempts to get rid of the millions of dead birds. There is also word of an infection in a backyard flock. I have said many times before that I feel there is an entomological method of transportation of the virus from wild birds to backyard/commercial flocks. I do not think that wild birds are infiltrating commercial facilities at the level we are seeing. Flies, however could.

The method (vector?) of transportation is:

a) "Dead Birds Don't Fly(!!!!)" This is actually an old Flame War battle cry. However, when a wild bird dies, the organic volatiles attract flies, which lay eggs, which become maggots, which become infected with H5N2, turn into fly's and fly away to be eaten by other birds - to continue the chain.

b) Flies have been found to carry influenza

c) Flies can violate biosafety zones. SEE PHOTO AT LINK!!!!

http://www.usatoday.com/story/news/n...reak/70918982/
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Old 02-04-2016, 02:42 PM   #2
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we discussed this. I may find a (or more) thread at FT,
if there is interest.

first, if there had been any evidence, we would have heard about it ...
then, flu doesn't replicate in insects --> no mutations, we might see
it in the sequences.

and sequences mixing of avian and other flu would attract attention !
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Old 04-02-2016, 09:59 AM   #3
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I downloaded genbank influenza on 2016/03/24
here the statistics:



gb160324 , 436334 sequences
gb160324.a , 393705 sequences
gb160324.b , 41221 sequences
gb160324.c , 1026 sequences
gb150324,r , 382 sequences
gb160324,ra , 363 sequences
gb160324.rb , 19sequences
gb160324.d , 39 sequences
gb160324.av , 143654 sequences
gb160324.hu , 226962 sequences
gb160324.sw , 49547 sequences
gb160324.eq , 7468 sequences
gb160324.re , 8703 sequences

bitsh1 , 16196 - 17050 sequences (Avian+rest)
bitsh2 , 16190 - 17069(aligned) sequences
bitsh3 , 16137 - 17044 sequences
bitsh4 , 26488 sequences
bitsh5 , 15780 - 16643 sequences
bitsh6 , 19471 sequences
bitsh7 , 16907 - 18091 sequences
bitsh8 , 16485 - 13919+3584 sequences

4:1019+596+3089+2113+6930+2207+2783+184+6839+1166+ 686+286+204+21+16+117=28256
6:5294+5744+1375+346+450+2523+1049+2246+1420=20447

----------------------------------------
143654 - 103400(45961)




potentially problematic: file,nr,access,length,my segment (typesz1), gb-segment
a,136927,EU333950,453,2,6
a,144146,EF660197,450,2,4
a,275489,DQ234276,460,B,7
a,286980,AY664802,477,7,1
a,289924,DQ118295,407,1,5
b,024701,GU064893,251,A:H5,6
ra,9,CQ840447,23,1,7
ra,10,CQ840478,23,8,7
rb,2,CQ840457,20,-,7









here the American H5N8 ,H5N2 mutation tables

23177 58c1.ll1 85 85
5080 58c2.ll1 18 80
16823 58c2.ll2 62
21230 58c3.ll1 78 78
24353 58c4.ll1 85 85
6889 58c5.ll1 23 86
16538 58c5.ll2 63
5861 58c6.ll1 21 91
19546 58c6.ll2 70
22867 58c7.ll1 89-8 81
24605 58c8.ll1 98-16 82




Code:
                                                                                                 0000000000011111111112 
                                                                                                 0114556689901134455790 
                                                                                                 2673562227735630300345 
                                                                                                 4149874722556654234755 
-codon-position---------------------------------------------------------------------------------- 2 1        12  1 1 1  
---Index-----------------------------------------------------------------------------------------AAAAGAAAGCTTGGGTGCTGGA 
   1 >KU201685,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,1                        ......G............A..        7      2 ,      7      2       1:>KU201685,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,1                        
   2 >KU201613,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,1                 ......G............A..        4      2 ,      4      2       2:>KU201613,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,1                 
   3 >KU201797,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,1                   ......G............A..        4      2 ,      4      2       3:>KU201797,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,1                   
   4 >KU201773,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,1                        ......G.........A..A..        4      3 ,      4      3       4:>KU201773,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,1                        
   5 >KU201757,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,1                       ......G............A..        4      2 ,      4      2       5:>KU201757,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,1                       
   6 >KU201765,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,1                        ......G............A..        2      2 ,      2      2       6:>KU201765,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,1                        
   7 >KU201789,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,1                   ......G............A..        3      2 ,      3      2       7:>KU201789,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,1                   
   8 >KU201869,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,1                          ......................        2      0 ,      2      0       8:>KU201869,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,1                          
   9 >American Index/h5n8                                                                        ......................        0      0 ,      0      0       9:>American Index/h5n8                                                                        
  10 >KU201749,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,1               ......................        0      0 ,      0      0      10:>KU201749,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,1               
  11 >KU201901,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,1             ......................        1      0 ,      1      0      11:>KU201901,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,1             
  12 >KU201821,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,1              ......................        1      0 ,      1      0      12:>KU201821,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,1              
  13 >KU201885,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,1              ......................        1      0 ,      1      0      13:>KU201885,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,1              
  14 >KR150898,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,1                 ......................        1      0 ,      1      0      14:>KR150898,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,1                 
  15 >KU201853,A/American wigeon/Washington/196336/2015,2015/01/02,USA,H5N1,Avian,1              .......G.........T....        3      2 ,      3      2      15:>KU201853,A/American wigeon/Washington/196336/2015,2015/01/02,USA,H5N1,Avian,1              
  16 >KP739418,A/American green-winged teal/Washington/195750/2014,2014/12/29,USA,H5N1,Avian,1   .......G.........T....        3      2 ,      3      2      16:>KP739418,A/American green-winged teal/Washington/195750/2014,2014/12/29,USA,H5N1,Avian,1   
  17 >KU201861,A/American wigeon/Washington/196340/2015,2015/01/02,USA,H5N1,Avian,1              .......G..............        5      1 ,      5      1      17:>KU201861,A/American wigeon/Washington/196340/2015,2015/01/02,USA,H5N1,Avian,1              
  18 >KP307981,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,1                   ......................        0      0 ,      0      0      18:>KP307981,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,1                   
  19 >KU201877,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,1              ......................        1      0 ,      1      0      19:>KU201877,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,1              
  20 >KU201837,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,1             ......................        1      0 ,      1      0      20:>KU201837,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,1             
  21 >KU201741,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,1                  ......................        1      0 ,      1      0      21:>KU201741,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,1                  
  22 >KP739410,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,1                     ...........C..........        1      1 ,      1      1      22:>KP739410,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,1                     
  23 >KP739402,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,1                         ...........C..........        1      1 ,      1      1      23:>KP739402,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,1                         
  24 >KP307954,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,1                             ..........C...........        1      1 ,      1      1      24:>KP307954,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,1                             
  25 >KU201669,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,1             ..........C.........A.        3      2 ,      3      2      25:>KU201669,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,1             
  26 >KU201677,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,1             ..........C.........A.        3      2 ,      3      2      26:>KU201677,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,1             
  27 >KU201845,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,1                      ..........C.........A.        3      2 ,      3      2      27:>KU201845,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,1                      
  28 >KU201637,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,1                     ..........C.........A.        3      2 ,      3      2      28:>KU201637,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,1                     
  29 >KU201733,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,1    ..........C.........A.        3      2 ,      3      2      29:>KU201733,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,1    
  30 >KT762881,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,1                    ..........C.........A.        3      2 ,      3      2      30:>KT762881,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,1                    
  31 >KU201661,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,1             ..........C.........A.        2      2 ,      2      2      31:>KU201661,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,1             
  32 >KT762921,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,1                  .....G....C.......C.A.        4      4 ,      4      4      32:>KT762921,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,1                  
  33 >KR233979,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,1                        .....G....C.......C.AG        5      5 ,      5      5      33:>KR233979,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,1                        
  34 >KT762953,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,1                  .....G....C.........AG        5      4 ,      5      4      34:>KT762953,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,1                  
  35 >KT002470,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,1                            ....AG....C.........AG        5      5 ,      5      5      35:>KT002470,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,1                            
  36 >KR234019,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,1                         ....A.....C.........AG        5      4 ,      5      4      36:>KR234019,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,1                         
  37 >KR234027,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,1                          G.........C.........AG        6      4 ,      6      4      37:>KR234027,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,1                          
  38 >KR234003,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,1                        G.........C.........AG        7      4 ,      7      4      38:>KR234003,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,1                        
  39 >KU201605,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,1                  G.........C.........AG        5      4 ,      5      4      39:>KU201605,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,1                  
  40 >KT762929,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,1                  ..........C.........AG        3      3 ,      3      3      40:>KT762929,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,1                  
  41 >KT762889,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,1               ..........C.........AG        4      3 ,      4      3      41:>KT762889,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,1               
  42 >KU201925,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,1                 ..........C.........AG        4      3 ,      4      3      42:>KU201925,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,1                 
  43 >KR234035,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,1                        ..........C.........AG        3      3 ,      3      3      43:>KR234035,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,1                        
  44 >KU201933,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,1                     ..G.......C..A......AG        5      5 ,      5      5      44:>KU201933,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,1                     
  45 >KT762945,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,1                  ..G.......C..A......AG        5      5 ,      5      5      45:>KT762945,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,1                  
  46 >KT762905,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,1                   ..........C.........AG        3      3 ,      3      3      46:>KT762905,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,1                   
  47 >KT002510,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,1                           ..........C...A.....AG        5      4 ,      5      4      47:>KT002510,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,1                           
  48 >KT002502,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,1                            ..........C...A.....AG        5      4 ,      5      4      48:>KT002502,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,1                            
  49 >KU201941,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,1                     .G........C...A.....AG        5      5 ,      5      5      49:>KU201941,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,1                     
  50 >KT002518,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,1                           ..........C...A.....AG        5      4 ,      5      4      50:>KT002518,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,1                           
  51 >KT002494,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,1                            ..........C...A.....AG        4      4 ,      4      4      51:>KT002494,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,1                            
  52 >KR492971,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,1                             ..........C...A.....AG        4      4 ,      4      4      52:>KR492971,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,1                             
  53 >KT762897,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,1                   ..........C...A.....AG        4      4 ,      4      4      53:>KT762897,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,1                   
  54 >KT002486,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,1                           ..........C...A.....AG        4      4 ,      4      4      54:>KT002486,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,1                           
  55 >KT002478,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,1                            ..........C...A.....AG        4      4 ,      4      4      55:>KT002478,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,1                            
  56 >KT280929,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,1                             ..........C...A.....AG        4      4 ,      4      4      56:>KT280929,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,1                             
  57 >KT002526,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,1                           ..........C...A.....AG        4      4 ,      4      4      57:>KT002526,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,1                           
  58 >KT762937,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,1                   ..........C...A.....AG        5      4 ,      5      4      58:>KT762937,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,1                   
  59 >KR234011,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,1                         ..........C.....A...AG        6      4 ,      6      4      59:>KR234011,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,1                         
  60 >KT762913,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,1                ..........C.........AG        5      3 ,      5      3      60:>KT762913,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,1                
  61 >KR150906,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,1                     ..........C.........A.        4      2 ,      4      2      61:>KR150906,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,1                     
  62 >KR233995,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,1                       ..........C.........A.        5      2 ,      5      2      62:>KR233995,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,1                       
  63 >KU201725,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,1     ...G......C.........A.        5      3 ,      5      3      63:>KU201725,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,1     
  64 >KU201629,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,1              ...G......C.........A.        5      3 ,      5      3      64:>KU201629,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,1              
  65 >KP739378,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,1                        ........A.C.........A.        4      3 ,      4      3      65:>KP739378,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,1                        
  66 >KP739394,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,1                        ........A.C.........A.        3      3 ,      3      3      66:>KP739394,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,1                        
  67 >KP739386,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,1                 ........A.C.........A.        3      3 ,      3      3      67:>KP739386,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,1                 
  68 >KU201717,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,1                        ..........C.........A.        2      2 ,      2      2      68:>KU201717,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,1                        
  69 >KU201645,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,1                     ..........C.........A.        2      2 ,      2      2      69:>KU201645,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,1                     
  70 >KU201781,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,1                       ..........C.........A.        2      2 ,      2      2      70:>KU201781,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,1                       
  71 >KU201709,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,1                        ..........C.........A.        2      2 ,      2      2      71:>KU201709,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,1                        
  72 >KU201653,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,1                     ..........C.........A.        2      2 ,      2      2      72:>KU201653,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,1                     
  73 >KP795734,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,1                             ..........C...........        2      1 ,      2      1      73:>KP795734,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,1                             
  74 >KP795726,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,1                             ..........C....C......        2      2 ,      2      2      74:>KP795726,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,1                             
  75 >KU201813,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,1                          ..........C....C......        3      2 ,      3      2      75:>KU201813,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,1                          
  76 >KU201621,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,1                       ..........C...........        1      1 ,      1      1      76:>KU201621,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,1                       
  77 >KU201701,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,1              ..........C.T.........        3      2 ,      3      2      77:>KU201701,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,1              
  78 >KP307973,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,1              ..........C.T.........        2      2 ,      2      2      78:>KP307973,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,1              
  79 >KR233987,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,1                     .G........C...........        4      2 ,      4      2      79:>KR233987,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,1                     
  80 >KU201693,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,1                       ..........C...........        3      1 ,      3      1      80:>KU201693,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,1                       
  81 >KU201893,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,1                      ..........C...........        1      1 ,      1      1      81:>KU201893,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,1                      
  82 >KU201909,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,1                      .........TC...........        3      2 ,      3      2      82:>KU201909,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,1                      
  83 >KU201829,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,1                      .........TC...........        2      2 ,      2      2      83:>KU201829,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,1                      
  84 >KU201805,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,1             ..........C...........        1      1 ,      1      1      84:>KU201805,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,1             
  85 >KU201917,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,1                 ..........C...........        6      1 ,      6      1      85:>KU201917,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,1                 
                                                                                                                        
---Index-----------------------------------------------------------------------------------------AAAAGAAAGCTTGGGTGCTGGA 
-codon-position---------------------------------------------------------------------------------- 2 1        12  1 1 1  
                                                                                                 0000000000011111111112 
                                                                                                 0114556689901134455790 
                                                                                                 2673562227735630300345 
                                                                                                 4149874722556654234755
Code:
                                                                                       001 
                                                                                       373 
                                                                                       888 
                                                                                       499 
-codon-position------------------------------------------------------------------------    
---Index-------------------------------------------------------------------------------CCG 
   1 >KR150899,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,2       ...        5      0 ,      5      0       1:>KR150899,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,2       
   2 >KP307982,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,2         ...        0      0 ,      0      0       2:>KP307982,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,2         
   3 >KU201822,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,2    ...        2      0 ,      2      0       3:>KU201822,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,2    
   4 >American Index/h5n8                                                              ...        0      0 ,      0      0       4:>American Index/h5n8                                                              
   5 >KP739411,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,2           .TA        2      2 ,      2      2       5:>KP739411,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,2           
   6 >KP739403,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,2               .TA        2      2 ,      2      2       6:>KP739403,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,2               
   7 >KU201886,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,2    ...        0      0 ,      0      0       7:>KU201886,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,2    
   8 >KU201902,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,2   ...        2      0 ,      2      0       8:>KU201902,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,2   
   9 >KU201790,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,2         A..        3      1 ,      3      1       9:>KU201790,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,2         
  10 >KU201798,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,2         A..        1      1 ,      1      1      10:>KU201798,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,2         
  11 >KU201758,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,2             A..        3      1 ,      3      1      11:>KU201758,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,2             
  12 >KU201686,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,2              A..        1      1 ,      1      1      12:>KU201686,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,2              
  13 >KU201766,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,2              A..        3      1 ,      3      1      13:>KU201766,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,2              
  14 >KU201774,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,2              A..        1      1 ,      1      1      14:>KU201774,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,2              
  15 >KU201614,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,2       A..        1      1 ,      1      1      15:>KU201614,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,2       
  16 >KU201838,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,2   ...        1      0 ,      1      0      16:>KU201838,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,2   
  17 >KU201878,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,2    ...        1      0 ,      1      0      17:>KU201878,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,2    
  18 >KU201870,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,2                ...        6      0 ,      6      0      18:>KU201870,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,2                
                                                                                           
---Index-------------------------------------------------------------------------------CCG 
-codon-position------------------------------------------------------------------------    
                                                                                       001 
                                                                                       373 
                                                                                       888 
                                                                                       499
Code:
                                                                                                00000000001111122 
                                                                                                22344556992669912 
                                                                                                05516494458255660 
                                                                                                12748014941900283 
-codon-position---------------------------------------------------------------------------------       21      21 
---Index----------------------------------------------------------------------------------------TAGGGAGGATGAACCGA 
   1 >KT002519,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,2                          ...A.C.AG.C..T...       11      6 ,     11      6       1:>KT002519,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,2                          
   2 >KT002495,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,2                           ...A.C.AG.C..T...        6      6 ,      6      6       2:>KT002495,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,2                           
   3 >KT002503,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,2                           ...A.C.AG.C..T...        6      6 ,      6      6       3:>KT002503,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,2                           
   4 >KT002527,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,2                          ...A.C.AG.C..T...        6      6 ,      6      6       4:>KT002527,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,2                          
   5 >KU201942,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,2                    ...A.C.AG.C..T...        7      6 ,      7      6       5:>KU201942,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,2                    
   6 >KT280930,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,2                            ...A.C.AG.C..T...        7      6 ,      7      6       6:>KT280930,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,2                            
   7 >KT002511,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,2                          ...A.C.AG.C..T...        7      6 ,      7      6       7:>KT002511,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,2                          
   8 >KT002479,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,2                           ...A.C.AG.C..T...        6      6 ,      6      6       8:>KT002479,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,2                           
   9 >KT762898,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,2                  ...A.C.AG.C..T...        8      6 ,      8      6       9:>KT762898,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,2                  
  10 >KT002487,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,2                          ...A.C.AG.C..T...        6      6 ,      6      6      10:>KT002487,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,2                          
  11 >KT762938,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,2                  ...A.C.AG.C..T...        8      6 ,      8      6      11:>KT762938,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,2                  
  12 >KR492972,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,2                            ...A.C.AG.C..T...        6      6 ,      6      6      12:>KR492972,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,2                            
  13 >KT762930,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,2                 ...A...A.....T...        7      3 ,      7      3      13:>KT762930,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,2                 
  14 >KR234036,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,2                       ...A...A.....T...        4      3 ,      4      3      14:>KR234036,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,2                       
  15 >KT762914,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,2               ...A...A.....T...        4      3 ,      4      3      15:>KT762914,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,2               
  16 >KT762906,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,2                  ...A...A.....T...        5      3 ,      5      3      16:>KT762906,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,2                  
  17 >KU201926,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,2                ...A...A.....T...        3      3 ,      3      3      17:>KU201926,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,2                
  18 >KT002471,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,2                           ...A...A.......T.        3      3 ,      3      3      18:>KT002471,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,2                           
  19 >KR233980,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,2                       ...A...A....G..T.        4      4 ,      4      4      19:>KR233980,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,2                       
  20 >KT762922,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,2                 ...A...A....G..T.        4      4 ,      4      4      20:>KT762922,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,2                 
  21 >KT762954,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,2                 ...A...A.......T.        4      3 ,      4      3      21:>KT762954,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,2                 
  22 >KT762890,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,2              ...A...A.........        6      2 ,      6      2      22:>KT762890,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,2              
  23 >KT762946,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,2                 ...A...A.C.......        3      3 ,      3      3      23:>KT762946,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,2                 
  24 >KU201934,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,2                    ...A...A.C.......        5      3 ,      5      3      24:>KU201934,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,2                    
  25 >KP739379,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,2                       .G.....A.........        2      2 ,      2      2      25:>KP739379,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,2                       
  26 >KP739387,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,2                .G.....A.........        2      2 ,      2      2      26:>KP739387,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,2                
  27 >KP739395,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,2                       .................        0      0 ,      0      0      27:>KP739395,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,2                       
  28 >KU201782,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,2                      .................        1      0 ,      1      0      28:>KU201782,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,2                      
  29 >KU201726,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,2    .................        1      0 ,      1      0      29:>KU201726,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,2    
  30 >KU201918,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,2                .................        1      0 ,      1      0      30:>KU201918,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,2                
  31 >KR150907,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,2                    .................        1      0 ,      1      0      31:>KR150907,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,2                    
  32 >KU201814,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,2                         .................        1      0 ,      1      0      32:>KU201814,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,2                         
  33 >KU201734,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,2   .................        1      0 ,      1      0      33:>KU201734,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,2   
  34 >KR233996,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,2                      .................        0      0 ,      0      0      34:>KR233996,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,2                      
  35 >KR234012,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,2                        .................        1      0 ,      1      0      35:>KR234012,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,2                        
  36 >KP307974,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,2             .................        1      0 ,      1      0      36:>KP307974,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,2             
  37 >KR234004,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,2                       .................        1      0 ,      1      0      37:>KR234004,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,2                       
  38 >KU201654,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,2                    .................        1      0 ,      1      0      38:>KU201654,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,2                    
  39 >KU201678,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,2            ....A............        1      1 ,      1      1      39:>KU201678,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,2            
  40 >KU201670,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,2            ....A............        1      1 ,      1      1      40:>KU201670,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,2            
  41 >KU201662,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,2            ....A............        2      1 ,      2      1      41:>KU201662,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,2            
  42 >KU201630,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,2             .................        0      0 ,      0      0      42:>KU201630,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,2             
  43 >KP795735,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,2                            ......A..........        2      1 ,      2      1      43:>KP795735,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,2                            
  44 >KP795727,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,2                            ......A..........        1      1 ,      1      1      44:>KP795727,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,2                            
  45 >KR233988,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,2                    ...........C.....        1      1 ,      1      1      45:>KR233988,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,2                    
  46 >KU201694,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,2                      ...........C.....        4      1 ,      4      1      46:>KU201694,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,2                      
  47 >KU201830,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,2                     .................        3      0 ,      3      0      47:>KU201830,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,2                     
  48 >KP307955,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,2                            .................        2      0 ,      2      0      48:>KP307955,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,2                            
  49 >KU201638,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,2                    .................        0      0 ,      0      0      49:>KU201638,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,2                    
  50 >KU201806,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,2            .................        2      0 ,      2      0      50:>KU201806,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,2            
  51 >KU201646,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,2                    .................        0      0 ,      0      0      51:>KU201646,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,2                    
  52 >KU201910,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,2                     .................        0      0 ,      0      0      52:>KU201910,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,2                     
  53 >KU201718,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,2                       ..T...........A.G        3      3 ,      3      3      53:>KU201718,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,2                       
  54 >KU201710,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,2                       ..T...........A.G        3      3 ,      3      3      54:>KU201710,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,2                       
  55 >KU201846,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,2                     .................        2      0 ,      2      0      55:>KU201846,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,2                     
  56 >KR234020,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,2                        .................        3      0 ,      3      0      56:>KR234020,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,2                        
  57 >KU201702,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,2             .................        2      0 ,      2      0      57:>KU201702,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,2             
  58 >KR234028,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,2                         .................        3      0 ,      3      0      58:>KR234028,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,2                         
  59 >KU201894,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,2                     .................        2      0 ,      2      0      59:>KU201894,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,2                     
  60 >KU201622,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,2                      .................        0      0 ,      0      0      60:>KU201622,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,2                      
  61 >KU201606,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,2                 C................        2      1 ,      2      1      61:>KU201606,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,2                 
  62 >KT762882,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,2                   C................        6      1 ,      6      1      62:>KT762882,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,2                   
                                                                                                                  
---Index----------------------------------------------------------------------------------------TAGGGAGGATGAACCGA 
-codon-position---------------------------------------------------------------------------------       21      21 
                                                                                                00000000001111122 
                                                                                                22344556992669912 
                                                                                                05516494458255660 
                                                                                                12748014941900283
Code:
                                                                                                0000000011111111111222 
                                                                                                1358889900133444567000 
                                                                                                3614690915568229308024 
                                                                                                0600743900486231683160 
-codon-position---------------------------------------------------------------------------------1       2 2   1   1 1  
---Index----------------------------------------------------------------------------------------GGGGAGTCCTGTATGGGGACCC 
   1 >KU201935,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,3                    AAA.GAC.T...GC......T.       13     10 ,     13     10       1:>KU201935,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,3                    
   2 >KT762947,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,3                 AAA.GAC.T...GC......T.       10     10 ,     10     10       2:>KT762947,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,3                 
   3 >KT762931,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,3                 ..A.GA..T...GC......T.        7      7 ,      7      7       3:>KT762931,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,3                 
   4 >KT762955,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,3                 ..A.GA..T...GC......T.       10      7 ,     10      7       4:>KT762955,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,3                 
   5 >KT762907,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,3                  ..A.GA..T...GC......T.       10      7 ,     10      7       5:>KT762907,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,3                  
   6 >KT762899,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,3                  ..A.GA..T...GCA.....TA       10      9 ,     10      9       6:>KT762899,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,3                  
   7 >KT002472,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,3                           ..A.GA..T...GCA.....T.       10      8 ,     10      8       7:>KT002472,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,3                           
   8 >KT002480,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,3                           ..A.GA..T...GCA.....T.       10      8 ,     10      8       8:>KT002480,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,3                           
   9 >KT002488,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,3                          ..A.GA..T...GCA.....T.        8      8 ,      8      8       9:>KT002488,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,3                          
  10 >KT002520,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,3                          ..A.GA..T...GCA.....T.        8      8 ,      8      8      10:>KT002520,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,3                          
  11 >KR492973,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,3                            ..A.GA..T...GCA.....T.        8      8 ,      8      8      11:>KR492973,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,3                            
  12 >KT002496,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,3                           ..A.GA..T...GCA.....T.        8      8 ,      8      8      12:>KT002496,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,3                           
  13 >KT002512,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,3                          ..A.GA..T...GCA.....T.        8      8 ,      8      8      13:>KT002512,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,3                          
  14 >KT280931,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,3                            ..A.GA..T...GCA.....T.        8      8 ,      8      8      14:>KT280931,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,3                            
  15 >KT002504,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,3                           ..A.GA..T...GCA.....T.        8      8 ,      8      8      15:>KT002504,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,3                           
  16 >KT762939,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,3                  ..A.GA..T...GCA.....T.        9      8 ,      9      8      16:>KT762939,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,3                  
  17 >KR234037,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,3                       ..A.GA..T...GC......T.        8      7 ,      8      7      17:>KR234037,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,3                       
  18 >KU201927,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,3                ..A.GA..T...GC......T.        9      7 ,      9      7      18:>KU201927,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,3                
  19 >KT762915,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,3               ..A.GA..T...GC......T.        8      7 ,      8      7      19:>KT762915,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,3               
  20 >KT762891,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,3              ..A.GA..T...GC......T.        9      7 ,      9      7      20:>KT762891,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,3              
  21 >KR233981,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,3                       ..A.GA..T....C......T.        6      6 ,      6      6      21:>KR233981,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,3                       
  22 >KT762923,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,3                 ..A.GA..T....C......T.        7      6 ,      7      6      22:>KT762923,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,3                 
  23 >KR234005,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,3                       ..A.GA......GC......T.        6      6 ,      6      6      23:>KR234005,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,3                       
  24 >KR234029,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,3                         ..A.GA......GC......T.        6      6 ,      6      6      24:>KR234029,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,3                         
  25 >KU201607,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,3                 ..A.GA......GC......T.        6      6 ,      6      6      25:>KU201607,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,3                 
  26 >KR234013,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,3                        ..A.GA......GC......T.        7      6 ,      7      6      26:>KR234013,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,3                        
  27 >KT762883,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,3                   ....GA......GC......T.        6      5 ,      6      5      27:>KT762883,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,3                   
  28 >KR234021,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,3                        ....GA......GC......T.        8      5 ,      8      5      28:>KR234021,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,3                        
  29 >KU201847,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,3                     ....GA.......C......T.        6      4 ,      6      4      29:>KU201847,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,3                     
  30 >KU201631,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,3             ....GA.......C......T.        5      4 ,      5      4      30:>KU201631,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,3             
  31 >KU201727,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,3    ....GA.......C......T.        4      4 ,      4      4      31:>KU201727,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,3    
  32 >KU201639,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,3                    ....GA.......C......T.        5      4 ,      5      4      32:>KU201639,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,3                    
  33 >KU201719,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,3                       ....GA.......C......T.        4      4 ,      4      4      33:>KU201719,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,3                       
  34 >KU201671,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,3            ....GA.......C......T.        5      4 ,      5      4      34:>KU201671,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,3            
  35 >KR150908,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,3                    ....GA.......C......T.        6      4 ,      6      4      35:>KR150908,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,3                    
  36 >KR233997,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,3                      ....GA.......C......T.        5      4 ,      5      4      36:>KR233997,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,3                      
  37 >KU201679,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,3            ....GA.......C......T.        6      4 ,      6      4      37:>KU201679,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,3            
  38 >KU201735,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,3   ....GA.......C......T.        5      4 ,      5      4      38:>KU201735,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,3   
  39 >KU201663,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,3            ....GA.......C......T.        4      4 ,      4      4      39:>KU201663,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,3            
  40 >KP739396,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,3                       ....GA.......C......T.        5      4 ,      5      4      40:>KP739396,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,3                       
  41 >KU201783,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,3                      ....GA.......C......T.        4      4 ,      4      4      41:>KU201783,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,3                      
  42 >KU201655,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,3                    ....GA.......C......T.        5      4 ,      5      4      42:>KU201655,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,3                    
  43 >KU201647,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,3                    ....GA.......C......T.        4      4 ,      4      4      43:>KU201647,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,3                    
  44 >KP739380,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,3                       ....GA.......C......T.        4      4 ,      4      4      44:>KP739380,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,3                       
  45 >KP739388,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,3                ....GA.......C......T.        4      4 ,      4      4      45:>KP739388,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,3                
  46 >KU201711,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,3                       ....GA.......C......T.        6      4 ,      6      4      46:>KU201711,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,3                       
  47 >KU201831,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,3                     .....A.......C........        4      2 ,      4      2      47:>KU201831,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,3                     
  48 >KU201815,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,3                         .....A.......C........        4      2 ,      4      2      48:>KU201815,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,3                         
  49 >KR233989,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,3                    .....A.......C........        4      2 ,      4      2      49:>KR233989,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,3                    
  50 >KU201807,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,3            .....A.......C........        4      2 ,      4      2      50:>KU201807,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,3            
  51 >KP307956,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,3                            .....A.......C........        4      2 ,      4      2      51:>KP307956,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,3                            
  52 >KU201695,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,3                      .....A.......C.......A        3      3 ,      3      3      52:>KU201695,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,3                      
  53 >KU201623,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,3                      .....A.......C........        2      2 ,      2      2      53:>KU201623,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,3                      
  54 >KP795736,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,3                            .....A...C...C........        5      3 ,      5      3      54:>KP795736,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,3                            
  55 >KP795728,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,3                            .....A...C...C........        3      3 ,      3      3      55:>KP795728,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,3                            
  56 >KU201919,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,3                .....A.......C........        2      2 ,      2      2      56:>KU201919,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,3                
  57 >KU201911,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,3                     .....A.......C........        2      2 ,      2      2      57:>KU201911,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,3                     
  58 >KU201895,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,3                     .....A.......C........        2      2 ,      2      2      58:>KU201895,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,3                     
  59 >KP307975,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,3             .....A.......C........        2      2 ,      2      2      59:>KP307975,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,3             
  60 >KU201703,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,3             .....A.......C........        3      2 ,      3      2      60:>KU201703,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,3             
  61 >KR150900,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,3                ......................        3      0 ,      3      0      61:>KR150900,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,3                
  62 >American Index/h5n8                                                                       ......................        0      0 ,      0      0      62:>American Index/h5n8                                                                       
  63 >KU201871,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,3                         ......................        2      0 ,      2      0      63:>KU201871,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,3                         
  64 >KP739412,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,3                    ...A.......C....A..T..        4      4 ,      4      4      64:>KP739412,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,3                    
  65 >KP739404,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,3                        ...A.......C....A..T..        4      4 ,      4      4      65:>KP739404,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,3                        
  66 >KU201759,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,3                      ...A......A....A..TT..        6      5 ,      6      5      66:>KU201759,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,3                      
  67 >KU201799,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,3                  ...A......A....A..TT..        6      5 ,      6      5      67:>KU201799,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,3                  
  68 >KU201687,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,3                       ...A......A....A..TT..        6      5 ,      6      5      68:>KU201687,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,3                       
  69 >KU201791,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,3                  ...A......A....A..TT..        7      5 ,      7      5      69:>KU201791,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,3                  
  70 >KU201615,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,3                ...A......A....A..TT..        6      5 ,      6      5      70:>KU201615,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,3                
  71 >KU201775,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,3                       ...A...T..A....A..TT..        7      6 ,      7      6      71:>KU201775,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,3                       
  72 >KU201767,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,3                       ...A...T..A....A..TT..        7      6 ,      7      6      72:>KU201767,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,3                       
  73 >KU201903,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,3            ...A...............T..        3      2 ,      3      2      73:>KU201903,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,3            
  74 >KU201823,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,3             ...A...............T..        4      2 ,      4      2      74:>KU201823,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,3             
  75 >KU201879,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,3             ...A.............A.T..        3      3 ,      3      3      75:>KU201879,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,3             
  76 >KU201887,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,3             ...A.............A.T..        3      3 ,      3      3      76:>KU201887,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,3             
  77 >KP307983,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,3                  ...A.............A.T..        4      3 ,      4      3      77:>KP307983,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,3                  
  78 >KU201839,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,3            ...A.............A.T..        5      3 ,      5      3      78:>KU201839,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,3            
                                                                                                                       
---Index----------------------------------------------------------------------------------------GGGGAGTCCTGTATGGGGACCC 
-codon-position---------------------------------------------------------------------------------1       2 2   1   1 1  
                                                                                                0000000011111111111222 
                                                                                                1358889900133444567000 
                                                                                                3614690915568229308024 
                                                                                                0600743900486231683160
Code:
                                                                                                 0000000000000000000000111111111111 
                                                                                                 0001122333344456667799011223444556 
                                                                                                 2235945013425611241407115446136495 
                                                                                                 0212268050234938424905305785571901 
-codon-position----------------------------------------------------------------------------------2112        11     2  2  2  2  1 1 
---Index-----------------------------------------------------------------------------------------TCAAGGCCCCTTCTTCATGAGCTTCATCGTCGGC 
   1 >KU201904,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,4             ........A.................CT.C....        9      4 ,      9      4       1:>KU201904,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,4             
   2 >KU201824,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,4              .......TA.................CT.C....        9      5 ,      9      5       2:>KU201824,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,4              
   3 >KU201760,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,4                       .......TA..................T.C....        4      4 ,      4      4       3:>KU201760,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,4                       
   4 >KU201768,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,4                        .......TA..................T.C....        6      4 ,      6      4       4:>KU201768,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,4                        
   5 >KU201616,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,4                 .......TA..................T.C....        4      4 ,      4      4       5:>KU201616,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,4                 
   6 >KU201792,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,4                   .......TA..................T.C....        6      4 ,      6      4       6:>KU201792,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,4                   
   7 >KU201688,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,4                        .......TA..................T.C....        4      4 ,      4      4       7:>KU201688,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,4                        
   8 >KU201800,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,4                   .......TA..................T.C....        4      4 ,      4      4       8:>KU201800,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,4                   
   9 >KU201776,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,4                        .......TA..................T.C....        4      4 ,      4      4       9:>KU201776,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,4                        
  10 >KP739405,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,4                         ........A..................T.C....        3      3 ,      3      3      10:>KP739405,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,4                         
  11 >KP307984,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,4                   ........A..................T.C....        3      3 ,      3      3      11:>KP307984,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,4                   
  12 >KP739413,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,4                     ........A..................T.C....        3      3 ,      3      3      12:>KP739413,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,4                     
  13 >KU201888,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,4              ........A..................T.C....        3      3 ,      3      3      13:>KU201888,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,4              
  14 >KU201840,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,4             ........A..................T.C....        7      3 ,      7      3      14:>KU201840,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,4             
  15 >KU201880,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,4              ........A..................T.C....        3      3 ,      3      3      15:>KU201880,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,4              
  16 >KU201872,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,4                          ......T.............T............T        6      3 ,      6      3      16:>KU201872,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,4                          
  17 >KU201752,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,4               ......T.............T............T        5      3 ,      5      3      17:>KU201752,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,4               
  18 >KR150901,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,4                 ......T.............T............T        4      3 ,      4      3      18:>KR150901,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,4                 
  19 >KU201744,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,4                  ......T.............T............T        5      3 ,      5      3      19:>KU201744,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,4                  
  20 >KU201864,A/American wigeon/Washington/196340/2015,2015/01/02,USA,H5N1,Avian,4              ......T..T.C...T....T............T        7      6 ,      7      6      20:>KU201864,A/American wigeon/Washington/196340/2015,2015/01/02,USA,H5N1,Avian,4              
  21 >KU201856,A/American wigeon/Washington/196336/2015,2015/01/02,USA,H5N1,Avian,4              ......T..T.C...T....T............T        6      6 ,      6      6      21:>KU201856,A/American wigeon/Washington/196336/2015,2015/01/02,USA,H5N1,Avian,4              
  22 >KP739421,A/American green-winged teal/Washington/195750/2014,2014/12/29,USA,H5N1,Avian,4   ......T..T.C...T....T..........A.T        7      7 ,      7      7      22:>KP739421,A/American green-winged teal/Washington/195750/2014,2014/12/29,USA,H5N1,Avian,4   
  23 >American Index/h5n8                                                                        ..................................        0      0 ,      0      0      23:>American Index/h5n8                                                                        
  24 >KU201704,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,4              ........................A.........        3      1 ,      3      1      24:>KU201704,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,4              
  25 >KP307976,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,4              ........................A.........        2      1 ,      2      1      25:>KP307976,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,4              
  26 >KU201808,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,4             ........................A.........        3      1 ,      3      1      26:>KU201808,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,4             
  27 >KU201608,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,4                  .T......................A.........        2      2 ,      2      2      27:>KU201608,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,4                  
  28 >KP795729,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,4                             .T......................AG........        3      3 ,      3      3      28:>KP795729,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,4                             
  29 >KP795737,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,4                             .T......................AG........        4      3 ,      4      3      29:>KP795737,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,4                             
  30 >KU201832,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,4                      .T......................A.........        2      2 ,      2      2      30:>KU201832,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,4                      
  31 >KR233990,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,4                     .T......................A.........        4      2 ,      4      2      31:>KR233990,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,4                     
  32 >KU201632,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,4              .T......................A.........        2      2 ,      2      2      32:>KU201632,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,4              
  33 >KP739389,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,4                 .T.GA...................A.....T...        6      5 ,      6      5      33:>KP739389,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,4                 
  34 >KP739381,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,4                        .T.GA...................A.....T...        5      5 ,      5      5      34:>KP739381,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,4                        
  35 >KP739397,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,4                        .T.G....................A.....T...        4      4 ,      4      4      35:>KP739397,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,4                        
  36 >KU201784,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,4                       .T......................A.........        2      2 ,      2      2      36:>KU201784,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,4                       
  37 >KU201896,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,4                      .T......................A.........        4      2 ,      4      2      37:>KU201896,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,4                      
  38 >KU201640,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,4                     .T......................A.........        2      2 ,      2      2      38:>KU201640,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,4                     
  39 >KU201920,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,4                 .T......................A.........        4      2 ,      4      2      39:>KU201920,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,4                 
  40 >KP307957,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,4                             .T......................A.........        2      2 ,      2      2      40:>KP307957,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,4                             
  41 >KR233998,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,4                       .T......................A.........        4      2 ,      4      2      41:>KR233998,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,4                       
  42 >KU201736,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,4    .T......................A.........        2      2 ,      2      2      42:>KU201736,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,4    
  43 >KU201848,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,4                      .T......................A.........        3      2 ,      3      2      43:>KU201848,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,4                      
  44 >KR234014,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,4                         .T......................A.........        3      2 ,      3      2      44:>KR234014,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,4                         
  45 >KR234030,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,4                          .T......................A.........        3      2 ,      3      2      45:>KR234030,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,4                          
  46 >KU201656,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,4                     .T......................A.........        3      2 ,      3      2      46:>KU201656,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,4                     
  47 >KU201696,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,4                       .T......................A.........        3      2 ,      3      2      47:>KU201696,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,4                       
  48 >KR150909,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,4                     .T......................A.........        3      2 ,      3      2      48:>KR150909,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,4                     
  49 >KU201816,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,4                          .T......................A.........        3      2 ,      3      2      49:>KU201816,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,4                          
  50 >KU201648,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,4                     .T......................A.........        2      2 ,      2      2      50:>KU201648,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,4                     
  51 >KR234038,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,4                        .T...........C..........A.........        3      3 ,      3      3      51:>KR234038,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,4                        
  52 >KT002473,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,4                            .T...........C..........A.........        4      3 ,      4      3      52:>KT002473,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,4                            
  53 >KU201936,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,4                     .T...........C.......A..A.........        5      4 ,      5      4      53:>KU201936,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,4                     
  54 >KT762948,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,4                  .T...........C.......A..A.........        4      4 ,      4      4      54:>KT762948,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,4                  
  55 >KT762892,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,4               .T...........C.......A..A.........        5      4 ,      5      4      55:>KT762892,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,4               
  56 >KU201680,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,4             .T...........CC.........A.........        5      4 ,      5      4      56:>KU201680,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,4             
  57 >KU201672,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,4             .T...........CC.........A.........        4      4 ,      4      4      57:>KU201672,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,4             
  58 >KU201664,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,4             .T...........CC.........A.........        5      4 ,      5      4      58:>KU201664,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,4             
  59 >KR233982,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,4                        .T..........TC.....G....A.........        5      5 ,      5      5      59:>KR233982,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,4                        
  60 >KT762924,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,4                  .T..........TC.....G....A.........        6      5 ,      6      5      60:>KT762924,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,4                  
  61 >KT762900,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,4                   CT........C..C..G.....A.A.......A.        8      8 ,      8      8      61:>KT762900,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,4                   
  62 >KT002489,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,4                           CT........C..C..G.....A.A.......A.        8      8 ,      8      8      62:>KT002489,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,4                           
  63 >KT762940,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,4                   CT........C..C..G.....A.A.......A.        8      8 ,      8      8      63:>KT762940,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,4                   
  64 >KU201943,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,4                     CT...A....C..C..G.....A.A.......A.        9      9 ,      9      9      64:>KU201943,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,4                     
  65 >KT002513,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,4                           CT...A....C..C..G.....A.A.......A.       10      9 ,     10      9      65:>KT002513,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,4                           
  66 >KT002505,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,4                            CT...A....C..C..G.....A.A.......A.        9      9 ,      9      9      66:>KT002505,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,4                            
  67 >KT002497,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,4                            CT...A....C..C..G.....A.A.......A.       11      9 ,     11      9      67:>KT002497,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,4                            
  68 >KT002521,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,4                           CT...A....C..C..G.....A.A......AA.       10     10 ,     10     10      68:>KT002521,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,4                           
  69 >KT002528,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,4                           CT...A....C..C..G.....A.A.......A.       10      9 ,     10      9      69:>KT002528,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,4                           
  70 >KR492974,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,4                             CT...A....C..C..G.....A.A.......A.        9      9 ,      9      9      70:>KR492974,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,4                             
  71 >KT002481,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,4                            CT...A....C..C..G.....A.A.......A.       10      9 ,     10      9      71:>KT002481,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,4                            
  72 >KT280932,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,4                             CT...A....C..C..G.....A.A.......A.        9      9 ,      9      9      72:>KT280932,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,4                             
  73 >KT762916,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,4                .T...........C..........A.........        5      3 ,      5      3      73:>KT762916,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,4                
  74 >KR234022,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,4                         .T...........C..........A.........        4      3 ,      4      3      74:>KR234022,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,4                         
  75 >KT762956,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,4                  .T...........C..........A.........        3      3 ,      3      3      75:>KT762956,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,4                  
  76 >KT762908,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,4                   .T...........C..........A.........        4      3 ,      4      3      76:>KT762908,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,4                   
  77 >KT762932,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,4                  .T...........C..........A.........        3      3 ,      3      3      77:>KT762932,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,4                  
  78 >KU201928,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,4                 .T...........C....A.....A.........        4      4 ,      4      4      78:>KU201928,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,4                 
  79 >KR234006,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,4                        .T................A.....A.........        4      3 ,      4      3      79:>KR234006,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,4                        
  80 >KU201728,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,4     .T......................A.........        2      2 ,      2      2      80:>KU201728,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,4     
  81 >KU201912,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,4                      .T......................A.........        4      2 ,      4      2      81:>KU201912,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,4                      
  82 >KU201720,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,4                        .T...............C.....CA...A.....        5      5 ,      5      5      82:>KU201720,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,4                        
  83 >KU201712,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,4                        .T...............C.....CA...A.....        5      5 ,      5      5      83:>KU201712,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,4                        
  84 >KU201624,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,4                       .TG...T.................A.........        7      4 ,      7      4      84:>KU201624,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,4                       
  85 >KT762884,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,4                    .TG.....................A.........        9      3 ,      9      3      85:>KT762884,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,4                    
                                                                                                                                    
---Index-----------------------------------------------------------------------------------------TCAAGGCCCCTTCTTCATGAGCTTCATCGTCGGC 
-codon-position----------------------------------------------------------------------------------2112        11     2  2  2  2  1 1 
                                                                                                 0000000000000000000000111111111111 
                                                                                                 0001122333344456667799011223444556 
                                                                                                 2235945013425611241407115446136495 
                                                                                                 0212268050234938424905305785571901
Code:
                                                                                                 0000011 
                                                                                                 0389913 
                                                                                                 5071531 
                                                                                                 4008701 
-codon-position----------------------------------------------------------------------------------     2  
---Index-----------------------------------------------------------------------------------------AACGTGC 
   1 >KU201617,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,5                 ...AA.A        4      3 ,      4      3       1:>KU201617,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,5                 
   2 >KU201689,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,5                        ...AA.A        3      3 ,      3      3       2:>KU201689,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,5                        
   3 >KU201801,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,5                   ...AA..        2      2 ,      2      2       3:>KU201801,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,5                   
   4 >KU201761,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,5                       ...AA..        2      2 ,      2      2       4:>KU201761,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,5                       
   5 >KU201769,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,5                        .G.AA..        3      3 ,      3      3       5:>KU201769,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,5                        
   6 >KU201777,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,5                        .G.AA..        3      3 ,      3      3       6:>KU201777,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,5                        
   7 >KU201793,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,5                   ...AA..        2      2 ,      2      2       7:>KU201793,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,5                   
   8 >KU201905,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,5             ...A...        1      1 ,      1      1       8:>KU201905,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,5             
   9 >KP307985,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,5                   ...A...        1      1 ,      1      1       9:>KP307985,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,5                   
  10 >KU201825,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,5              ...A...        2      1 ,      2      1      10:>KU201825,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,5              
  11 >KP739406,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,5                         ...A...        1      1 ,      1      1      11:>KP739406,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,5                         
  12 >KU201841,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,5             ...A...        2      1 ,      2      1      12:>KU201841,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,5             
  13 >KU201881,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,5              ...A...        1      1 ,      1      1      13:>KU201881,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,5              
  14 >KU201889,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,5              ...A...        2      1 ,      2      1      14:>KU201889,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,5              
  15 >KP739414,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,5                     ...A...        1      1 ,      1      1      15:>KP739414,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,5                     
  16 >KU201865,A/American wigeon/Washington/196340/2015,2015/01/02,USA,H5N1,Avian,5              ..T..A.        3      2 ,      3      2      16:>KU201865,A/American wigeon/Washington/196340/2015,2015/01/02,USA,H5N1,Avian,5              
  17 >KU201857,A/American wigeon/Washington/196336/2015,2015/01/02,USA,H5N1,Avian,5              G.T..A.        3      3 ,      3      3      17:>KU201857,A/American wigeon/Washington/196336/2015,2015/01/02,USA,H5N1,Avian,5              
  18 >KP739422,A/American green-winged teal/Washington/195750/2014,2014/12/29,USA,H5N1,Avian,5   G.T..A.        3      3 ,      3      3      18:>KP739422,A/American green-winged teal/Washington/195750/2014,2014/12/29,USA,H5N1,Avian,5   
  19 >KR150902,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,5                 .......        1      0 ,      1      0      19:>KR150902,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,5                 
  20 >American Index/h5n8                                                                        .......        0      0 ,      0      0      20:>American Index/h5n8                                                                        
  21 >KU201745,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,5                  .......        0      0 ,      0      0      21:>KU201745,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,5                  
  22 >KU201753,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,5               .......        2      0 ,      2      0      22:>KU201753,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,5               
  23 >KU201873,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,5                          .......        3      0 ,      3      0      23:>KU201873,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,5                          
                                                                                                         
---Index-----------------------------------------------------------------------------------------AACGTGC 
-codon-position----------------------------------------------------------------------------------     2  
                                                                                                 0000011 
                                                                                                 0389913 
                                                                                                 5071531 
                                                                                                 4008701
Code:
                                                                                                0000000111 
                                                                                                3367789024 
                                                                                                1282466838 
                                                                                                5673472738 
-codon-position--------------------------------------------------------------------------------- 2    21   
---Index----------------------------------------------------------------------------------------GTAGTCAGCT 
   1 >KU201657,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,5                    ...A......        5      1 ,      5      1       1:>KU201657,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,5                    
   2 >KR234031,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,5                         ..GA.T....        4      3 ,      4      3       2:>KR234031,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,5                         
   3 >KU201609,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,5                 ..G..T...C        3      3 ,      3      3       3:>KU201609,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,5                 
   4 >KU201697,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,5                      .........C        1      1 ,      1      1       4:>KU201697,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,5                      
   5 >KR234023,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,5                        ..........        3      0 ,      3      0       5:>KR234023,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,5                        
   6 >KP795738,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,5                            ..........        1      0 ,      1      0       6:>KP795738,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,5                            
   7 >KU201897,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,5                     ..........        0      0 ,      0      0       7:>KU201897,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,5                     
   8 >KU201849,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,5                     ..........        1      0 ,      1      0       8:>KU201849,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,5                     
   9 >KU201921,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,5                ..........        3      0 ,      3      0       9:>KU201921,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,5                
  10 >KU201713,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,5                       ..........        1      0 ,      1      0      10:>KU201713,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,5                       
  11 >KU201641,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,5                    ..........        0      0 ,      0      0      11:>KU201641,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,5                    
  12 >KU201705,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,5             ..........        1      0 ,      1      0      12:>KU201705,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,5             
  13 >KR150910,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,5                    ..........        3      0 ,      3      0      13:>KR150910,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,5                    
  14 >KP307958,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,5                            ..G.......        1      1 ,      1      1      14:>KP307958,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,5                            
  15 >KT762909,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,5                  ..G.A.....        2      2 ,      2      2      15:>KT762909,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,5                  
  16 >KT762949,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,5                 A.G.A.....        3      3 ,      3      3      16:>KT762949,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,5                 
  17 >KT762925,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,5                 A.G.A...T.        4      4 ,      4      4      17:>KT762925,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,5                 
  18 >KR233983,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,5                       A.G.A...T.        4      4 ,      4      4      18:>KR233983,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,5                       
  19 >KU201937,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,5                    A.G.A.....        3      3 ,      3      3      19:>KU201937,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,5                    
  20 >KT762893,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,5              ..G.A.....        2      2 ,      2      2      20:>KT762893,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,5              
  21 >KT002474,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,5                           ..G.A.....        3      2 ,      3      2      21:>KT002474,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,5                           
  22 >KR234039,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,5                       ..G.A.....        2      2 ,      2      2      22:>KR234039,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,5                       
  23 >KR234015,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,5                        ..G.A.....        3      2 ,      3      2      23:>KR234015,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,5                        
  24 >KT762933,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,5                 ..G.A.....        3      2 ,      3      2      24:>KT762933,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,5                 
  25 >KT002482,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,5                           .CG.A.....        3      3 ,      3      3      25:>KT002482,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,5                           
  26 >KR492975,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,5                            .CG.A.....        4      3 ,      4      3      26:>KR492975,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,5                            
  27 >KT002490,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,5                          .CG.A.....        3      3 ,      3      3      27:>KT002490,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,5                          
  28 >KU201944,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,5                    .CG.A.....        4      3 ,      4      3      28:>KU201944,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,5                    
  29 >KT762941,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,5                  .CG.A.....        3      3 ,      3      3      29:>KT762941,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,5                  
  30 >KT762901,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,5                  .CG.A.....        4      3 ,      4      3      30:>KT762901,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,5                  
  31 >KT002522,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,5                          .CG.A.....        3      3 ,      3      3      31:>KT002522,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,5                          
  32 >KT280933,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,5                            .CG.A.....        4      3 ,      4      3      32:>KT280933,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,5                            
  33 >KT002529,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,5                          .CG.A.....        3      3 ,      3      3      33:>KT002529,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,5                          
  34 >KT002514,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,5                          .CG.A.....        4      3 ,      4      3      34:>KT002514,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,5                          
  35 >KT002506,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,5                           .CG.A.....        3      3 ,      3      3      35:>KT002506,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,5                           
  36 >KT002498,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,5                           .CG.A.....        3      3 ,      3      3      36:>KT002498,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,5                           
  37 >KT762957,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,5                 ..G.A.....        2      2 ,      2      2      37:>KT762957,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,5                 
  38 >KU201929,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,5                ..G.A.....        3      2 ,      3      2      38:>KU201929,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,5                
  39 >KT762917,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,5               ..G.A.....        5      2 ,      5      2      39:>KT762917,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,5               
  40 >KR234007,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,5                       ..G.......        1      1 ,      1      1      40:>KR234007,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,5                       
  41 >KU201633,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,5             ..........        0      0 ,      0      0      41:>KU201633,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,5             
  42 >KU201665,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,5            ..........        0      0 ,      0      0      42:>KU201665,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,5            
  43 >KP739398,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,5                       ..........        0      0 ,      0      0      43:>KP739398,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,5                       
  44 >KU201681,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,5            ..........        0      0 ,      0      0      44:>KU201681,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,5            
  45 >KR233999,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,5                      ..........        0      0 ,      0      0      45:>KR233999,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,5                      
  46 >KP307977,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,5             ..........        0      0 ,      0      0      46:>KP307977,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,5             
  47 >KU201737,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,5   .......A..        1      1 ,      1      1      47:>KU201737,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,5   
  48 >KU201785,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,5                      .......A..        1      1 ,      1      1      48:>KU201785,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,5                      
  49 >KU201721,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,5                       ..........        0      0 ,      0      0      49:>KU201721,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,5                       
  50 >KU201625,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,5                      ..........        1      0 ,      1      0      50:>KU201625,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,5                      
  51 >KU201673,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,5            ..........        0      0 ,      0      0      51:>KU201673,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,5            
  52 >KU201913,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,5                     ..........        1      0 ,      1      0      52:>KU201913,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,5                     
  53 >KP795730,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,5                            ..........        0      0 ,      0      0      53:>KP795730,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,5                            
  54 >KU201817,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,5                         ..........        1      0 ,      1      0      54:>KU201817,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,5                         
  55 >KR233991,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,5                    ..........        3      0 ,      3      0      55:>KR233991,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,5                    
  56 >KU201649,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,5                    ..........        2      0 ,      2      0      56:>KU201649,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,5                    
  57 >KU201833,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,5                     ..........        2      0 ,      2      0      57:>KU201833,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,5                     
  58 >KU201809,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,5            ..........        2      0 ,      2      0      58:>KU201809,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,5            
  59 >KU201729,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,5    ..........        2      0 ,      2      0      59:>KU201729,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,5    
  60 >KP739390,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,5                ......C...        2      1 ,      2      1      60:>KP739390,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,5                
  61 >KP739382,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,5                       A.....C...        2      2 ,      2      2      61:>KP739382,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,5                       
  62 >KT762885,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,5                   ..........        2      0 ,      2      0      62:>KT762885,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,5                   
  63 >KT338413,A/American green-winged teal/Alaska/472/2014,2014/10/10,USA,H5N2,Avian,5         ..........        5      0 ,      5      0      63:>KT338413,A/American green-winged teal/Alaska/472/2014,2014/10/10,USA,H5N2,Avian,5         
                                                                                                           
---Index----------------------------------------------------------------------------------------GTAGTCAGCT 
-codon-position--------------------------------------------------------------------------------- 2    21   
                                                                                                0000000111 
                                                                                                3367789024 
                                                                                                1282466838 
                                                                                                5673472738
Code:
                                                                                       0000001 
                                                                                       0022351 
                                                                                       4612932 
                                                                                       2044345 
-codon-position------------------------------------------------------------------------  12    
---Index-------------------------------------------------------------------------------GCGCCAG 
   1 >KR150903,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,6       ATAAT..        6      5 ,      6      5       1:>KR150903,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,6       
   2 >KU201754,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,6     ATAAT.A        7      6 ,      7      6       2:>KU201754,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,6     
   3 >KU201746,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,6        ATAAT.A        7      6 ,      7      6       3:>KU201746,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,6        
   4 >KU201874,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,6                A......        4      1 ,      4      1       4:>KU201874,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,6                
   5 >KU201826,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,6    .......        3      0 ,      3      0       5:>KU201826,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,6    
   6 >KU201842,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,6   .......        2      0 ,      2      0       6:>KU201842,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,6   
   7 >KU201882,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,6    .......        2      0 ,      2      0       7:>KU201882,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,6    
   8 >KP307986,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,6         .......        2      0 ,      2      0       8:>KP307986,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,6         
   9 >KU201890,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,6    .......        1      0 ,      1      0       9:>KU201890,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,6    
  10 >KU201906,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,6   .......        1      0 ,      1      0      10:>KU201906,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,6   
  11 >KP739407,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,6               .......        0      0 ,      0      0      11:>KP739407,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,6               
  12 >American Index/h5n8                                                              .......        0      0 ,      0      0      12:>American Index/h5n8                                                              
  13 >KP739415,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,6           .......        0      0 ,      0      0      13:>KP739415,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,6           
  14 >KU201778,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,6              .....G.        1      1 ,      1      1      14:>KU201778,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,6              
  15 >KU201618,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,6       .....G.        1      1 ,      1      1      15:>KU201618,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,6       
  16 >KU201770,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,6              .....G.        1      1 ,      1      1      16:>KU201770,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,6              
  17 >KU201690,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,6              .....G.        2      1 ,      2      1      17:>KU201690,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,6              
  18 >KU201762,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,6             .....G.        2      1 ,      2      1      18:>KU201762,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,6             
  19 >KU201794,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,6         .....G.        4      1 ,      4      1      19:>KU201794,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,6         
  20 >KU201802,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,6         .....G.        4      1 ,      4      1      20:>KU201802,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,6         
  21 >KT388678,A/goose/Taiwan/TNO16/2015,2015/01/17,Taiwan,H5N8,Avian,6                A......       13      1 ,     13      1      21:>KT388678,A/goose/Taiwan/TNO16/2015,2015/01/17,Taiwan,H5N8,Avian,6                
                                                                                               
---Index-------------------------------------------------------------------------------GCGCCAG 
-codon-position------------------------------------------------------------------------  12    
                                                                                       0000001 
                                                                                       0022351 
                                                                                       4612932 
                                                                                       2044345
Code:
                                                                                                00000000000000011111111111 
                                                                                                00011125666677800111122233 
                                                                                                55613521344755418066603400 
                                                                                                09492890526208420247975648 
-codon-position---------------------------------------------------------------------------------2212 21 2 1  211 1  21212  
---Index----------------------------------------------------------------------------------------TTTACGGACTGGCGCATATGCTTAGG 
   1 >KT338414,A/American green-winged teal/Alaska/472/2014,2014/10/10,USA,H5N2,Avian,6         ........T.................        6      1 ,      6      1       1:>KT338414,A/American green-winged teal/Alaska/472/2014,2014/10/10,USA,H5N2,Avian,6         
   2 >CY194183,A/mallard/Southcentral Alaska/12ML00988_AAF1/2014,2014/09/22,USA,H5N2,Avian,6    ...G....T.................        2      2 ,      2      2       2:>CY194183,A/mallard/Southcentral Alaska/12ML00988_AAF1/2014,2014/09/22,USA,H5N2,Avian,6    
   3 >CY194158,A/mallard/Southcentral Alaska/12ML00991/2014,2014/09/22,USA,H5N2,Avian,6         ...G....T.................        2      2 ,      2      2       3:>CY194158,A/mallard/Southcentral Alaska/12ML00991/2014,2014/09/22,USA,H5N2,Avian,6         
   4 >CY194150,A/mallard/Southcentral Alaska/12ML00985/2014,2014/09/22,USA,mixedŽN2,Avian,6     ...G....T.................        2      2 ,      2      2       4:>CY194150,A/mallard/Southcentral Alaska/12ML00985/2014,2014/09/22,USA,mixedŽN2,Avian,6     
   5 >CY194141,A/mallard/Southcentral Alaska/12ML00977/2014,2014/09/22,USA,H5N2,Avian,6         ...G....T.................        5      2 ,      5      2       5:>CY194141,A/mallard/Southcentral Alaska/12ML00977/2014,2014/09/22,USA,H5N2,Avian,6         
   6 >CY194215,A/mallard/Southcentral Alaska/12ML01048_AAF1/2014,2014/09/23,USA,H5N2,Avian,6    ...GT...T.................        4      3 ,      4      3       6:>CY194215,A/mallard/Southcentral Alaska/12ML01048_AAF1/2014,2014/09/23,USA,H5N2,Avian,6    
   7 >CY194167,A/mallard/Southcentral Alaska/12ML01469/2014,2014/10/24,USA,mixedŽN2,Avian,6     ....T.A.T.................        3      3 ,      3      3       7:>CY194167,A/mallard/Southcentral Alaska/12ML01469/2014,2014/10/24,USA,mixedŽN2,Avian,6     
   8 >CY194191,A/mallard/Southcentral Alaska/12ML00991_AAF1/2014,2014/09/22,USA,H5N2,Avian,6    ....T.A.T.................        3      3 ,      3      3       8:>CY194191,A/mallard/Southcentral Alaska/12ML00991_AAF1/2014,2014/09/22,USA,H5N2,Avian,6    
   9 >KU201642,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,6                    ..........................        1      0 ,      1      0       9:>KU201642,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,6                    
  10 >KP795739,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,6                            ...............T........T.        3      2 ,      3      2      10:>KP795739,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,6                            
  11 >KP795731,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,6                            ...........A...T........T.        3      3 ,      3      3      11:>KP795731,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,6                            
  12 >KP307959,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,6                            ...........A..............        3      1 ,      3      1      12:>KP307959,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,6                            
  13 >KU201658,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,6                    ..........................        1      0 ,      1      0      13:>KU201658,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,6                    
  14 >KR150911,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,6                    ..........................        1      0 ,      1      0      14:>KR150911,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,6                    
  15 >KU201634,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,6             ..........................        1      0 ,      1      0      15:>KU201634,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,6             
  16 >KU201922,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,6                ..........................        1      0 ,      1      0      16:>KU201922,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,6                
  17 >KU201810,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,6            ..........................        1      0 ,      1      0      17:>KU201810,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,6            
  18 >KR234000,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,6                      ..........................        1      0 ,      1      0      18:>KR234000,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,6                      
  19 >KU201730,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,6    ..........................        2      0 ,      2      0      19:>KU201730,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,6    
  20 >KU201650,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,6                    ..........................        2      0 ,      2      0      20:>KU201650,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,6                    
  21 >KU201706,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,6             .................G.A......        3      2 ,      3      2      21:>KU201706,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,6             
  22 >KP307978,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,6             .................G.A......        2      2 ,      2      2      22:>KP307978,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,6             
  23 >KU201898,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,6                     ..........................        2      0 ,      2      0      23:>KU201898,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,6                     
  24 >KU201666,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,6            .......G..............C...        3      2 ,      3      2      24:>KU201666,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,6            
  25 >KU201610,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,6                 .......G.C...A........C...        6      4 ,      6      4      25:>KU201610,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,6                 
  26 >KR234008,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,6                       .........C...A........C...        4      3 ,      4      3      26:>KR234008,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,6                       
  27 >KR234016,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,6                        .........C...A........C...        3      3 ,      3      3      27:>KR234016,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,6                        
  28 >KR234032,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,6                         .........C...A........C...        5      3 ,      5      3      28:>KR234032,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,6                         
  29 >KT762894,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,6              .........C...A........C..A        6      4 ,      6      4      29:>KT762894,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,6              
  30 >KU201945,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,6                    .........C...A....C....G.A        7      5 ,      7      5      30:>KU201945,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,6                    
  31 >KT002507,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,6                           .........C...A....C....G.A        5      5 ,      5      5      31:>KT002507,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,6                           
  32 >KR492976,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,6                            .........C...A....C....G.A        5      5 ,      5      5      32:>KR492976,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,6                            
  33 >KT002530,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,6                          .........C...A....C....G.A        5      5 ,      5      5      33:>KT002530,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,6                          
  34 >KT002499,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,6                           .........C...A....C....G.A        5      5 ,      5      5      34:>KT002499,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,6                           
  35 >KT002483,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,6                           .........C...A....C....G.A        5      5 ,      5      5      35:>KT002483,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,6                           
  36 >KT002515,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,6                          .........C...A....C....G.A        5      5 ,      5      5      36:>KT002515,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,6                          
  37 >KT280934,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,6                            .........C...A....C....G.A        5      5 ,      5      5      37:>KT280934,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,6                            
  38 >KT002523,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,6                          .........C...A....C....G.A        5      5 ,      5      5      38:>KT002523,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,6                          
  39 >KT002491,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,6                          .........C...A....C....G.A        5      5 ,      5      5      39:>KT002491,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,6                          
  40 >KT762942,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,6                  .........C...A..C.C....G.A        6      6 ,      6      6      40:>KT762942,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,6                  
  41 >KT762902,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,6                  .........C...A..C.C....G.A        6      6 ,      6      6      41:>KT762902,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,6                  
  42 >KT002475,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,6                           .........C...A........C..A        4      4 ,      4      4      42:>KT002475,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,6                           
  43 >KR233984,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,6                       .........C...A........C..A        4      4 ,      4      4      43:>KR233984,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,6                       
  44 >KU201938,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,6                    .........C...A........C..A        4      4 ,      4      4      44:>KU201938,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,6                    
  45 >KT762918,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,6               .........C...A........C..A        4      4 ,      4      4      45:>KT762918,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,6               
  46 >KT762950,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,6                 .........C...A........C..A        4      4 ,      4      4      46:>KT762950,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,6                 
  47 >KU201930,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,6                .........C...A........C..A        4      4 ,      4      4      47:>KU201930,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,6                
  48 >KT762934,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,6                 .........C...A........C..A        4      4 ,      4      4      48:>KT762934,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,6                 
  49 >KT762958,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,6                 .........C...A........C..A        4      4 ,      4      4      49:>KT762958,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,6                 
  50 >KT762926,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,6                 .........C...A........C..A        4      4 ,      4      4      50:>KT762926,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,6                 
  51 >KR234040,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,6                       .........C...A........C..A        4      4 ,      4      4      51:>KR234040,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,6                       
  52 >KT762910,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,6                  .........C...A........C..A        5      4 ,      5      4      52:>KT762910,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,6                  
  53 >KT762886,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,6                   .............A........C...        3      2 ,      3      2      53:>KT762886,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,6                   
  54 >KR234024,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,6                        .............A........C...        3      2 ,      3      2      54:>KR234024,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,6                        
  55 >KP739383,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,6                       .....................CC...        2      2 ,      2      2      55:>KP739383,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,6                       
  56 >KP739391,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,6                .....................CC...        2      2 ,      2      2      56:>KP739391,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,6                
  57 >KU201786,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,6                      ......................C...        2      1 ,      2      1      57:>KU201786,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,6                      
  58 >KU201722,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,6                       .....A................C...        2      2 ,      2      2      58:>KU201722,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,6                       
  59 >KU201714,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,6                       .....A................C...        2      2 ,      2      2      59:>KU201714,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,6                       
  60 >KU201682,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,6            ......................C...        2      1 ,      2      1      60:>KU201682,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,6            
  61 >KU201850,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,6                     ......................C...        1      1 ,      1      1      61:>KU201850,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,6                     
  62 >KP739399,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,6                       ......................C...        1      1 ,      1      1      62:>KP739399,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,6                       
  63 >KU201674,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,6            ......................C...        1      1 ,      1      1      63:>KU201674,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,6            
  64 >KU201738,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,6   ......................C...        1      1 ,      1      1      64:>KU201738,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,6   
  65 >KU201818,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,6                         ..........................        0      0 ,      0      0      65:>KU201818,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,6                         
  66 >KU201626,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,6                      ............A.............        1      1 ,      1      1      66:>KU201626,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,6                      
  67 >KU201698,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,6                      ..........A.A.............        3      2 ,      3      2      67:>KU201698,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,6                      
  68 >KR233992,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,6                    ..........A.A.............        4      2 ,      4      2      68:>KR233992,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,6                    
  69 >KU201834,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,6                     CCC...........T.....T.....        6      5 ,      6      5      69:>KU201834,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,6                     
  70 >KU201914,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,6                     CCC...........T.....T.....        5      5 ,      5      5      70:>KU201914,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,6                     
                                                                                                                           
---Index----------------------------------------------------------------------------------------TTTACGGACTGGCGCATATGCTTAGG 
-codon-position---------------------------------------------------------------------------------2212 21 2 1  211 1  21212  
                                                                                                00000000000000011111111111 
                                                                                                00011125666677800111122233 
                                                                                                55613521344755418066603400 
                                                                                                09492890526208420247975648
Code:
                                                                                                 000000000 
                                                                                                 233466789 
                                                                                                 923589912 
                                                                                                 474976431 
-codon-position----------------------------------------------------------------------------------  1   2   
---Index-----------------------------------------------------------------------------------------GCGGGTCTA 
   1 >KP732699,A/duck/Eastern China/S0131/2014,2014/01/31,China,H5N2,Avian,7                     .........        3      0 ,      3      0       1:>KP732699,A/duck/Eastern China/S0131/2014,2014/01/31,China,H5N2,Avian,7                     
   2 >KU201707,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,7              .........        0      0 ,      0      0       2:>KU201707,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,7              
   3 >KR150904,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,7                 .........        0      0 ,      0      0       3:>KR150904,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,7                 
   4 >KU201811,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,7             .........        0      0 ,      0      0       4:>KU201811,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,7             
   5 >KU201651,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,7                     .........        0      0 ,      0      0       5:>KU201651,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,7                     
   6 >KU201627,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,7                       .........        0      0 ,      0      0       6:>KU201627,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,7                       
   7 >KJ509087,A/breeder duck/Korea/H200/2014,2014/01/27,South Korea,H5N8,Avian,7                .........        0      0 ,      0      0       7:>KJ509087,A/breeder duck/Korea/H200/2014,2014/01/27,South Korea,H5N8,Avian,7                
   8 >KP307979,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,7              .........        0      0 ,      0      0       8:>KP307979,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,7              
   9 >KP795740,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,7                             .........        0      0 ,      0      0       9:>KP795740,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,7                             
  10 >KU201923,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,7                 .........        0      0 ,      0      0      10:>KU201923,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,7                 
  11 >KU201643,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,7                     .........        0      0 ,      0      0      11:>KU201643,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,7                     
  12 >KJ756676,A/baikal teal/Korea/1437/2014,2014/01/20,South Korea,H5N8,Avian,7                 .........        0      0 ,      0      0      12:>KJ756676,A/baikal teal/Korea/1437/2014,2014/01/20,South Korea,H5N8,Avian,7                 
  13 >KP307960,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,7                             .........        0      0 ,      0      0      13:>KP307960,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,7                             
  14 >KU201755,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,7               .........        0      0 ,      0      0      14:>KU201755,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,7               
  15 >KJ746114,A/mallard/Korea/W452/2014,2014/02/05,South Korea,H5N8,Avian,7                     .........        0      0 ,      0      0      15:>KJ746114,A/mallard/Korea/W452/2014,2014/02/05,South Korea,H5N8,Avian,7                     
  16 >KJ509055,A/breeder duck/Korea/H128/2014,2014/01/25,South Korea,H5N8,Avian,7                .........        0      0 ,      0      0      16:>KJ509055,A/breeder duck/Korea/H128/2014,2014/01/25,South Korea,H5N8,Avian,7                
  17 >American Index/h5n8                                                                        .........        0      0 ,      0      0      17:>American Index/h5n8                                                                        
  18 >KJ756679,A/baikal teal/Korea/1446/2014,2014/01/20,South Korea,H5N8,Avian,7                 .........        0      0 ,      0      0      18:>KJ756679,A/baikal teal/Korea/1446/2014,2014/01/20,South Korea,H5N8,Avian,7                 
  19 >KU201899,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,7                      .........        0      0 ,      0      0      19:>KU201899,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,7                      
  20 >KR233993,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,7                     .........        1      0 ,      1      0      20:>KR233993,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,7                     
  21 >KU201747,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,7                  .........        1      0 ,      1      0      21:>KU201747,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,7                  
  22 >KJ509079,A/breeder duck/Korea/H158/2014,2014/01/26,South Korea,H5N8,Avian,7                .........        1      0 ,      1      0      22:>KJ509079,A/breeder duck/Korea/H158/2014,2014/01/26,South Korea,H5N8,Avian,7                
  23 >KU201699,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,7                       .......C.        1      1 ,      1      1      23:>KU201699,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,7                       
  24 >KU201946,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,7                     .....C.CG        3      3 ,      3      3      24:>KU201946,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,7                     
  25 >KT280935,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,7                             .....C..G        2      2 ,      2      2      25:>KT280935,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,7                             
  26 >KT002516,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,7                           .....C..G        2      2 ,      2      2      26:>KT002516,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,7                           
  27 >KT002500,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,7                            .....C..G        2      2 ,      2      2      27:>KT002500,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,7                            
  28 >KT002524,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,7                           .....C..G        2      2 ,      2      2      28:>KT002524,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,7                           
  29 >KT002531,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,7                           .....C..G        2      2 ,      2      2      29:>KT002531,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,7                           
  30 >KT762903,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,7                   .....C..G        2      2 ,      2      2      30:>KT762903,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,7                   
  31 >KR492977,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,7                             .....C..G        2      2 ,      2      2      31:>KR492977,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,7                             
  32 >KT002492,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,7                           .....C..G        2      2 ,      2      2      32:>KT002492,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,7                           
  33 >KT002484,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,7                            .....C..G        2      2 ,      2      2      33:>KT002484,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,7                            
  34 >KT002508,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,7                            .....C..G        2      2 ,      2      2      34:>KT002508,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,7                            
  35 >KT762943,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,7                   .....C..G        2      2 ,      2      2      35:>KT762943,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,7                   
  36 >KU201939,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,7                     ........G        2      1 ,      2      1      36:>KU201939,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,7                     
  37 >KT762887,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,7                    ........G        3      1 ,      3      1      37:>KT762887,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,7                    
  38 >KU201739,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,7    ........G        3      1 ,      3      1      38:>KU201739,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,7    
  39 >KU201931,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,7                 ........G        2      1 ,      2      1      39:>KU201931,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,7                 
  40 >KR234009,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,7                        ........G        2      1 ,      2      1      40:>KR234009,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,7                        
  41 >KU201723,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,7                        ......T.G        2      2 ,      2      2      41:>KU201723,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,7                        
  42 >KU201715,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,7                        ......T.G        2      2 ,      2      2      42:>KU201715,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,7                        
  43 >KT762935,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,7                  ........G        1      1 ,      1      1      43:>KT762935,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,7                  
  44 >KU201851,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,7                      ........G        1      1 ,      1      1      44:>KU201851,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,7                      
  45 >KR233985,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,7                        ........G        1      1 ,      1      1      45:>KR233985,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,7                        
  46 >KT762927,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,7                  ........G        1      1 ,      1      1      46:>KT762927,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,7                  
  47 >KP739392,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,7                 ........G        1      1 ,      1      1      47:>KP739392,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,7                 
  48 >KU201787,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,7                       ........G        1      1 ,      1      1      48:>KU201787,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,7                       
  49 >KU201675,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,7             ........G        1      1 ,      1      1      49:>KU201675,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,7             
  50 >KU201667,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,7             ........G        1      1 ,      1      1      50:>KU201667,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,7             
  51 >KU201731,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,7     ........G        1      1 ,      1      1      51:>KU201731,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,7     
  52 >KR234001,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,7                       ........G        1      1 ,      1      1      52:>KR234001,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,7                       
  53 >KT002476,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,7                            ........G        1      1 ,      1      1      53:>KT002476,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,7                            
  54 >KT762919,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,7                ........G        1      1 ,      1      1      54:>KT762919,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,7                
  55 >KT762951,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,7                  ........G        1      1 ,      1      1      55:>KT762951,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,7                  
  56 >KR234017,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,7                         ........G        1      1 ,      1      1      56:>KR234017,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,7                         
  57 >KU201635,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,7              ........G        1      1 ,      1      1      57:>KU201635,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,7              
  58 >KT762911,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,7                   ........G        1      1 ,      1      1      58:>KT762911,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,7                   
  59 >KP739384,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,7                        ........G        1      1 ,      1      1      59:>KP739384,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,7                        
  60 >KT762895,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,7               ........G        1      1 ,      1      1      60:>KT762895,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,7               
  61 >KP739400,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,7                        ........G        1      1 ,      1      1      61:>KP739400,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,7                        
  62 >KU201683,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,7             ........G        1      1 ,      1      1      62:>KU201683,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,7             
  63 >KR234041,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,7                        ........G        1      1 ,      1      1      63:>KR234041,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,7                        
  64 >KR234025,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,7                         ........G        1      1 ,      1      1      64:>KR234025,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,7                         
  65 >KR234033,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,7                          ........G        1      1 ,      1      1      65:>KR234033,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,7                          
  66 >KT762959,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,7                  ........G        2      1 ,      2      1      66:>KT762959,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,7                  
  67 >KU201611,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,7                  ....A...G        2      2 ,      2      2      67:>KU201611,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,7                  
  68 >KJ509007,A/Baikal teal/Korea/H68/2014,2014/01/22,South Korea,H5N8,Avian,7                  ....A....        1      1 ,      1      1      68:>KJ509007,A/Baikal teal/Korea/H68/2014,2014/01/22,South Korea,H5N8,Avian,7                  
  69 >KU201915,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,7                      ...A.....        1      1 ,      1      1      69:>KU201915,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,7                      
  70 >KU201835,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,7                      ...A.....        2      1 ,      2      1      70:>KU201835,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,7                      
  71 >KU201859,A/American wigeon/Washington/196336/2015,2015/01/02,USA,H5N1,Avian,7              ..T......        1      1 ,      1      1      71:>KU201859,A/American wigeon/Washington/196336/2015,2015/01/02,USA,H5N1,Avian,7              
  72 >KU201867,A/American wigeon/Washington/196340/2015,2015/01/02,USA,H5N1,Avian,7              ..T......        1      1 ,      1      1      72:>KU201867,A/American wigeon/Washington/196340/2015,2015/01/02,USA,H5N1,Avian,7              
  73 >KP739424,A/American green-winged teal/Washington/195750/2014,2014/12/29,USA,H5N1,Avian,7   ..T......        1      1 ,      1      1      73:>KP739424,A/American green-winged teal/Washington/195750/2014,2014/12/29,USA,H5N1,Avian,7   
  74 >KU201875,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,7                          ..T......        2      1 ,      2      1      74:>KU201875,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,7                          
  75 >KU201803,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,7                   .T.......        2      1 ,      2      1      75:>KU201803,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,7                   
  76 >KU201795,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,7                   .T.......        1      1 ,      1      1      76:>KU201795,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,7                   
  77 >KU201619,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,7                 .T.......        1      1 ,      1      1      77:>KU201619,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,7                 
  78 >KU201891,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,7              .T.......        1      1 ,      1      1      78:>KU201891,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,7              
  79 >KP307987,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,7                   .T.......        1      1 ,      1      1      79:>KP307987,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,7                   
  80 >KU201907,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,7             .T.......        1      1 ,      1      1      80:>KU201907,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,7             
  81 >KP739416,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,7                     .T.......        1      1 ,      1      1      81:>KP739416,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,7                     
  82 >KU201763,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,7                       .T.......        1      1 ,      1      1      82:>KU201763,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,7                       
  83 >KP739408,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,7                         .T.......        1      1 ,      1      1      83:>KP739408,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,7                         
  84 >KU201883,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,7              .T.......        1      1 ,      1      1      84:>KU201883,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,7              
  85 >KU201843,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,7             .T.......        2      1 ,      2      1      85:>KU201843,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,7             
  86 >KU201771,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,7                        AT.......        2      2 ,      2      2      86:>KU201771,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,7                        
  87 >KU201779,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,7                        AT....... 

’ 2      2 ,      2      2      87:>KU201779,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,7                        
  88 >KU201691,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,7                        .T.......        2      1 ,      2      1      88:>KU201691,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,7                        
  89 >KU201827,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,7              .T.......        3      1 ,      3      1      89:>KU201827,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,7              
                                                                                                           
---Index-----------------------------------------------------------------------------------------GCGGGTCTA 
-codon-position----------------------------------------------------------------------------------  1   2   
                                                                                                 000000000 
                                                                                                 233466789 
                                                                                                 923589912 
                                                                                                 474976431



Code:
                                                                                                 0000000 
                                                                                                1355667 
                                                                                                0802571 
                                                                                                2447035 
-codon-position---------------------------------------------------------------------------------   2211 
---Index----------------------------------------------------------------------------------------CCATAAG 
   1 >KR150905,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,8                TA.....        5      2 ,      5      2       1:>KR150905,A/turkey/California/K1500169-1.2/2015,2015/01/21,USA,H5N8,Avian,8                
   2 >KU201748,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,8                 TA.....        3      2 ,      3      2       2:>KU201748,A/Canada goose/Oregon/AH0012452/2015,2015/01/18,USA,H5N8,Avian,8                 
   3 >KU201756,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,8              TA.....        2      2 ,      2      2       3:>KU201756,A/American wigeon/Oregon/AH0012525/2015,2015/01/18,USA,H5N8,Avian,8              
   4 >KU201876,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,8                         T......        2      1 ,      2      1       4:>KU201876,A/mallard/Oregon/195536/2014,2014/12/24,USA,H5N8,Avian,8                         
   5 >KJ756705,A/baikal teal/Korea/1457/2014,2014/01/20,South Korea,H5N8,Avian,8                .......        0      0 ,      0      0       5:>KJ756705,A/baikal teal/Korea/1457/2014,2014/01/20,South Korea,H5N8,Avian,8                
   6 >KU201764,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,8                      .......        2      0 ,      2      0       6:>KU201764,A/mallard/Nevada/AH0006855/2015,2015/01/23,USA,H5N8,Avian,8                      
   7 >KJ756699,A/baikal teal/Korea/1447/2014,2014/01/20,South Korea,H5N8,Avian,8                .......        0      0 ,      0      0       7:>KJ756699,A/baikal teal/Korea/1447/2014,2014/01/20,South Korea,H5N8,Avian,8                
   8 >KP795733,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,8                            .......        0      0 ,      0      0       8:>KP795733,A/chicken/BC/FAV8/2014,2014/12/03,Canada,H5N2,Avian,8                            
   9 >KP739409,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,8                        .......        0      0 ,      0      0       9:>KP739409,A/chicken/Oregon/41613-2/2014,2014/12/16,USA,H5N8,Avian,8                        
  10 >KJ756695,A/baikal teal/Korea/1437/2014,2014/01/20,South Korea,H5N8,Avian,8                .......        0      0 ,      0      0      10:>KJ756695,A/baikal teal/Korea/1437/2014,2014/01/20,South Korea,H5N8,Avian,8                
  11 >KP307980,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,8             .......        0      0 ,      0      0      11:>KP307980,A/Northern pintail/Washington/40964/2014,2014/12/08,USA,H5N2,Avian,8             
  12 >KJ756703,A/baikal teal/Korea/1454/2014,2014/01/20,South Korea,H5N8,Avian,8                .......        1      0 ,      1      0      12:>KJ756703,A/baikal teal/Korea/1454/2014,2014/01/20,South Korea,H5N8,Avian,8                
  13 >American Index/h5n8                                                                       .......        0      0 ,      0      0      13:>American Index/h5n8                                                                       
  14 >KP307988,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,8                  .......        0      0 ,      0      0      14:>KP307988,A/gyrfalcon/Washington/41088-6/2014,2014/12/08,USA,H5N8,Avian,8                  
  15 >KR150913,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,8                    .......        0      0 ,      0      0      15:>KR150913,A/pheasant/Washington/3147-2/2015,2015/01/26,USA,H5N2,Avian,8                    
  16 >KP307961,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,8                            .......        2      0 ,      2      0      16:>KP307961,A/turkey/BC/FAV10/2014,2014/12/02,Canada,H5N2,Avian,8                            
  17 >KU201644,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,8                    .......        1      0 ,      1      0      17:>KU201644,A/wood duck/Oregon/AH0007244/2015,2015/01/03,USA,H5N2,Avian,8                    
  18 >KP739417,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,8                    .......        0      0 ,      0      0      18:>KP739417,A/guinea fowl/Oregon/41613-1/2014,2014/12/16,USA,H5N8,Avian,8                    
  19 >KU201780,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,8                       .......        0      0 ,      0      0      19:>KU201780,A/mallard/Idaho/AH0005955/2014,2014/12/22,USA,H5N8,Avian,8                       
  20 >KU201916,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,8                     .......        0      0 ,      0      0      20:>KU201916,A/mallard/Washington/195810/2014,2014/12/23,USA,H5N2,Avian,8                     
  21 >KU201708,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,8             .......        0      0 ,      0      0      21:>KU201708,A/Northern pintail/Oregon/AH0003871/2015,2015/01/12,USA,H5N2,Avian,8             
  22 >KJ509112,A/breeder duck/Korea/H249/2014,2014/01/28,South Korea,H5N8,Avian,8               .......        1      0 ,      1      0      22:>KJ509112,A/breeder duck/Korea/H249/2014,2014/01/28,South Korea,H5N8,Avian,8               
  23 >KJ509136,A/mallard/Korea/H297/2014,2014/01/29,South Korea,H5N8,Avian,8                    .......        0      0 ,      0      0      23:>KJ509136,A/mallard/Korea/H297/2014,2014/01/29,South Korea,H5N8,Avian,8                    
  24 >KU201772,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,8                       .......        1      0 ,      1      0      24:>KU201772,A/mallard/Idaho/AH0005954/2014,2014/12/22,USA,H5N8,Avian,8                       
  25 >KU201692,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,8                       .......        0      0 ,      0      0      25:>KU201692,A/mallard/Idaho/AH0008597/2015,2015/01/07,USA,H5N8,Avian,8                       
  26 >KU201660,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,8                    .......        0      0 ,      0      0      26:>KU201660,A/wood duck/Oregon/AH0007263/2015,2015/01/03,USA,H5N2,Avian,8                    
  27 >KU201804,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,8                  .......        0      0 ,      0      0      27:>KU201804,A/bald eagle/Idaho/15-002892-2/2015,2015/01/20,USA,H5N8,Avian,8                  
  28 >KU201652,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,8                    .......        0      0 ,      0      0      28:>KU201652,A/wood duck/Oregon/AH0007257/2015,2015/01/03,USA,H5N2,Avian,8                    
  29 >KU201836,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,8                     .......        0      0 ,      0      0      29:>KU201836,A/mallard/Washington/196262/2015,2015/01/01,USA,H5N2,Avian,8                     
  30 >KU201620,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,8                .......        0      0 ,      0      0      30:>KU201620,A/American wigeon/Utah/AH0007824/2015,2015/01/02,USA,H5N8,Avian,8                
  31 >KU201884,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,8             .......        0      0 ,      0      0      31:>KU201884,A/American wigeon/Washington/195198/2014,2014/12/16,USA,H5N8,Avian,8             
  32 >KJ756696,A/baikal teal/Korea/1441/2014,2014/01/20,South Korea,H5N8,Avian,8                .......        1      0 ,      1      0      32:>KJ756696,A/baikal teal/Korea/1441/2014,2014/01/20,South Korea,H5N8,Avian,8                
  33 >KU201924,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,8                .......        0      0 ,      0      0      33:>KU201924,A/Canada goose/Washington/197619/2014,2014/12/30,USA,H5N2,Avian,8                
  34 >KU201908,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,8            .......        1      0 ,      1      0      34:>KU201908,A/peregrine falcon/Washington/196426/2014,2014/12/29,USA,H5N8,Avian,8            
  35 >KJ746115,A/mallard/Korea/W452/2014,2014/02/05,South Korea,H5N8,Avian,8                    .......        0      0 ,      0      0      35:>KJ746115,A/mallard/Korea/W452/2014,2014/02/05,South Korea,H5N8,Avian,8                    
  36 >KU201844,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,8            .......        1      0 ,      1      0      36:>KU201844,A/Northern pintail/Washington/196271/2014,2014/12/29,USA,H5N8,Avian,8            
  37 >KJ509120,A/breeder chicken/Korea/H250/2014,2014/01/28,South Korea,H5N8,Avian,8            .......        0      0 ,      0      0      37:>KJ509120,A/breeder chicken/Korea/H250/2014,2014/01/28,South Korea,H5N8,Avian,8            
  38 >KR233994,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,8                    .......        2      0 ,      2      0      38:>KR233994,A/chicken/Washington/3490-18/2015,2015/01/29,USA,H5N2,Avian,8                    
  39 >KU201796,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,8                  .......        0      0 ,      0      0      39:>KU201796,A/chicken/California/15-004912/2015,2015/02/06,USA,H5N8,Avian,8                  
  40 >KJ509104,A/white-fronted goose/Korea/H231/2014,2014/01/28,South Korea,H5N8,Avian,8        .......        2      0 ,      2      0      40:>KJ509104,A/white-fronted goose/Korea/H231/2014,2014/01/28,South Korea,H5N8,Avian,8        
  41 >KU201812,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,8            .......        0      0 ,      0      0      41:>KU201812,A/Northern pintail/Washington/195365/2014,2014/12/23,USA,H5N2,Avian,8            
  42 >AB932560,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,8                        .......        2      0 ,      2      0      42:>AB932560,A/chicken/kumamoto/1-7/2014,2014/04/13,Japan,H5N8,Avian,8                        
  43 >KU201828,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,8             .......        0      0 ,      0      0      43:>KU201828,A/American wigeon/Washington/195968/2014,2014/12/30,USA,H5N8,Avian,8             
  44 >KJ509064,A/broiler duck/Korea/H133/2014,2014/01/25,South Korea,H5N8,Avian,8               .......        1      0 ,      1      0      44:>KJ509064,A/broiler duck/Korea/H133/2014,2014/01/25,South Korea,H5N8,Avian,8               
  45 >KU201700,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,8                      .......        0      0 ,      0      0      45:>KU201700,A/mallard/Oregon/AH0008887/2015,2015/01/07,USA,H5N2,Avian,8                      
  46 >KJ508944,A/broiler duck/Korea/H47/2014,2014/01/20,South Korea,H5N8,Avian,8                .......        1      0 ,      1      0      46:>KJ508944,A/broiler duck/Korea/H47/2014,2014/01/20,South Korea,H5N8,Avian,8                
  47 >KJ509168,A/spot-billed duck/Korea/H455-42/2014,2014/02/08,South Korea,H5N8,Avian,8        .......        0      0 ,      0      0      47:>KJ509168,A/spot-billed duck/Korea/H455-42/2014,2014/02/08,South Korea,H5N8,Avian,8        
  48 >KU201900,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,8                     .......        2      0 ,      2      0      48:>KU201900,A/mallard/Washington/195246/2014,2014/12/08,USA,H5N2,Avian,8                     
  49 >KJ508912,A/broiler duck/Korea/H31/2014,2014/01/19,South Korea,H5N8,Avian,8                .......        0      0 ,      0      0      49:>KJ508912,A/broiler duck/Korea/H31/2014,2014/01/19,South Korea,H5N8,Avian,8                
  50 >KU201820,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,8                         .......        1      0 ,      1      0      50:>KU201820,A/mallard/Oregon/195547/2014,2014/12/22,USA,H5N2,Avian,8                         
  51 >KU201628,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,8                      .......        0      0 ,      0      0      51:>KU201628,A/mallard/Oregon/AH0003952/2015,2015/01/05,USA,H5N2,Avian,8                      
  52 >KU201892,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,8             .......        0      0 ,      0      0      52:>KU201892,A/American wigeon/Washington/195205/2014,2014/12/16,USA,H5N8,Avian,8             
  53 >KP795741,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,8                            .......        2      0 ,      2      0      53:>KP795741,A/chicken/BC/FAV9/2014,2014/12/03,Canada,H5N2,Avian,8                            
  54 >KJ756708,A/baikal teal/Korea/2402/2014,2014/01/20,South Korea,H5N8,Avian,8                .......        0      0 ,      0      0      54:>KJ756708,A/baikal teal/Korea/2402/2014,2014/01/20,South Korea,H5N8,Avian,8                
  55 >KR234010,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,8                       ...C...        1      1 ,      1      1      55:>KR234010,A/turkey/Minnesota/7172-1/2015,2015/02/27,USA,H5N2,Avian,8                       
  56 >KU201732,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,8    ...C...        2      1 ,      2      1      56:>KU201732,A/American green-winged teal/Idaho/AH0011899/2015,2015/01/18,USA,H5N2,Avian,8    
  57 >KU201788,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,8                      ...C...        1      1 ,      1      1      57:>KU201788,A/mallard/Oregon/AH0003821/2014,2014/12/20,USA,H5N2,Avian,8                      
  58 >KP739393,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,8                ...C..A        2      2 ,      2      2      58:>KP739393,A/domestic duck/Washington/61-16/2014,2014/12/30,USA,H5N2,Avian,8                
  59 >KP739385,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,8                       ...C..A        2      2 ,      2      2      59:>KP739385,A/chicken/Washington/61-9/2014,2014/12/30,USA,H5N2,Avian,8                       
  60 >KU201676,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,8            ...C...        1      1 ,      1      1      60:>KU201676,A/Northern shoveler/Oregon/AH0007337/2015,2015/01/03,USA,H5N2,Avian,8            
  61 >KU201716,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,8                       ...C.C.        2      2 ,      2      2      61:>KU201716,A/mallard/Idaho/AH0007412/2015,2015/01/17,USA,H5N2,Avian,8                       
  62 >KU201724,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,8                       ...C.C.        2      2 ,      2      2      62:>KU201724,A/mallard/Idaho/AH0007413/2015,2015/01/17,USA,H5N2,Avian,8                       
  63 >KR234034,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,8                         ...C...        1      1 ,      1      1      63:>KR234034,A/chicken/Kansas/8395-3/2015,2015/03/12,USA,H5N2,Avian,8                         
  64 >KR234002,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,8                      ...C...        3      1 ,      3      1      64:>KR234002,A/chicken/Oregon/A01819044/2015,2015/02/11,USA,H5N2,Avian,8                      
  65 >KU201852,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,8                     ...C...        1      1 ,      1      1      65:>KU201852,A/mallard/Washington/196865/2015,2015/01/10,USA,H5N2,Avian,8                     
  66 >KR234026,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,8                        ...C...        3      1 ,      3      1      66:>KR234026,A/turkey/Arkansas/7791-1/2015,2015/03/08,USA,H5N2,Avian,8                        
  67 >KU201740,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,8   ...C...        1      1 ,      1      1      67:>KU201740,A/American green-winged teal/Oregon/AH0012403/2015,2015/01/14,USA,H5N2,Avian,8   
  68 >KP739401,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,8                       ...C...        1      1 ,      1      1      68:>KP739401,A/turkey/Washington/61-22/2014,2014/12/30,USA,H5N2,Avian,8                       
  69 >KT762888,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,8                   ...C...        1      1 ,      1      1      69:>KT762888,A/chicken/Montana/15-010559-1/2015,2015/04/01,USA,H5N2,Avian,8                   
  70 >KU201612,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,8                 ...C...        1      1 ,      1      1      70:>KU201612,A/snow goose/Missouri/15-011246-1/2015,2015/03/,USA,H5N2,Avian,8                 
  71 >KU201636,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,8             ...C...        1      1 ,      1      1      71:>KU201636,A/Northern pintail/Oregon/AH0003967/2015,2015/01/05,USA,H5N2,Avian,8             
  72 >KU201668,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,8            ...C...        1      1 ,      1      1      72:>KU201668,A/Northern shoveler/Oregon/AH0007332/2015,2015/01/03,USA,H5N2,Avian,8            
  73 >KU201684,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,8            ...C...        1      1 ,      1      1      73:>KU201684,A/Northern shoveler/Oregon/AH0007339/2015,2015/01/03,USA,H5N2,Avian,8            
  74 >KR234018,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,8                        ...C...        1      1 ,      1      1      74:>KR234018,A/turkey/Missouri/7458-1/2015,2015/03/06,USA,H5N2,Avian,8                        
  75 >KT002532,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,8                          ...CC..        2      2 ,      2      2      75:>KT002532,A/chicken/Iowa/14589-1/2015,2015/05/04,USA,H5N2,Avian,8                          
  76 >KT762928,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,8                 ...CC..        2      2 ,      2      2      76:>KT762928,A/chicken/Minnesota/15-013533-1/2015,2015/04/26,USA,H5N2,Avian,8                 
  77 >KT762912,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,8                  ...CC..        2      2 ,      2      2      77:>KT762912,A/turkey/Wisconsin/15-012012-2/2015,2015/04/14,USA,H5N2,Avian,8                  
  78 >KT762896,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,8              ...CC..        2      2 ,      2      2      78:>KT762896,A/turkey/North Dakota/15-011420-13/2015,2015/04/10,USA,H5N2,Avian,8              
  79 >KR492978,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,8                            ...CC..        2      2 ,      2      2      79:>KR492978,A/chicken/Iowa/04-20/2015,2015/04/20,USA,H5N2,Avian,8                            
  80 >KT280936,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,8                            ...CC..        2      2 ,      2      2      80:>KT280936,A/chicken/Iowa/21981/2015,2015/04/27,USA,H5N2,Avian,8                            
  81 >KU201932,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,8                ...CC..        2      2 ,      2      2      81:>KU201932,A/Cooper's hawk/Minnesota/198225/2015,2015/04/14,USA,H5N2,Avian,8                
  82 >KT762920,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,8               ...CC..        2      2 ,      2      2      82:>KT762920,A/turkey/North Dakota/15-013049-1/2015,2015/04/21,USA,H5N2,Avian,8               
  83 >KT762952,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,8                 ...CC..        2      2 ,      2      2      83:>KT762952,A/chicken/Wisconsin/15-011595-1/2015,2015/04/08,USA,H5N2,Avian,8                 
  84 >KT002517,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,8                          ...CC..        2      2 ,      2      2      84:>KT002517,A/chicken/Iowa/14322-6/2015,2015/05/01,USA,H5N2,Avian,8                          
  85 >KT002501,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,8                           ...CC..        2      2 ,      2      2      85:>KT002501,A/turkey/Iowa/14318-1/2015,2015/04/30,USA,H5N2,Avian,8                           
  86 >KT002485,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,8                           ...CC..        2      2 ,      2      2      86:>KT002485,A/turkey/Iowa/13541-1/2015,2015/04/25,USA,H5N2,Avian,8                           
  87 >KR233986,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,8                       ...CC..        2      2 ,      2      2      87:>KR233986,A/turkey/Minnesota/9892-2/2015,2015/03/26,USA,H5N2,Avian,8                       
  88 >KU201940,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,8                    ...CC..        2      2 ,      2      2      88:>KU201940,A/snowy owl/Wisconsin/198399/2015,2015/04/13,USA,H5N2,Avian,8                    
  89 >KT762960,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,8                 ...CC..        4      2 ,      4      2      89:>KT762960,A/chicken/Wisconsin/15-012160-1/2015,2015/04/13,USA,H5N2,Avian,8                 
  90 >KT002477,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,8                           ...CC..        2      2 ,      2      2      90:>KT002477,A/turkey/Iowa/11762-1/2015,2015/04/12,USA,H5N2,Avian,8                           
  91 >KR234042,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,8                       ...CC..        3      2 ,      3      2      91:>KR234042,A/turkey/Minnesota/9845-4/2015,2015/03/25,USA,H5N2,Avian,8                       
  92 >KT002493,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,8                          ...CC..        2      2 ,      2      2      92:>KT002493,A/chicken/Iowa/13542-2/2015,2015/04/25,USA,H5N2,Avian,8                          
  93 >KT002525,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,8                          ...CC..        3      2 ,      3      2      93:>KT002525,A/chicken/Iowa/14399-4/2015,2015/04/30,USA,H5N2,Avian,8                          
  94 >KT002509,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,8                           ...CC..        2      2 ,      2      2      94:>KT002509,A/turkey/Iowa/14319-1/2015,2015/05/01,USA,H5N2,Avian,8                           
  95 >KT762936,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,8                 ...CC..        3      2 ,      3      2      95:>KT762936,A/turkey/South Dakota/15-010371/2015,2015/03/30,USA,H5N2,Avian,8                 
  96 >KU201947,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,8                    ...CC..        2      2 ,      2      2      96:>KU201947,A/Canada goose/Kansas/197850/2015,2015/03/13,USA,H5N2,Avian,8                    
  97 >KT762944,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,8                  ..GCC..        3      3 ,      3      3      97:>KT762944,A/chicken/Nebraska/15-017990-5/2015,2015/05/29,USA,H5N2,Avian,8                  
  98 >KT762904,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,8                  ..GCC..        4      3 ,      4      3      98:>KT762904,A/chicken/Nebraska/15-017897-1/2015,2015/06/01,USA,H5N2,Avian,8                  
                                                                                                        
---Index----------------------------------------------------------------------------------------CCATAAG 
-codon-position---------------------------------------------------------------------------------   2211 
                                                                                                0000000 
                                                                                                1355667 
                                                                                                0802571 
                                                                                                2447035
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Old 05-25-2016, 12:30 AM   #4
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http://wwwnc.cdc.gov/eid/article/22/7/15-2032_article
Surveillance for Highly Pathogenic Avian Influenza Virus in Wild Birds during Outbreaks
in Domestic Poultry, Minnesota, 2015
...
To understand the potential role of wild birds, we tested 3,139 waterfowl fecal samples
and 104 sick and dead birds during March 9–June 4, 2015. HPAIV was isolated from
a Cooper’s hawk but not from waterfowl fecal samples.
...
detected in domestic poultry and wild birds as far east as Kentucky, USA, through January 2016
...
Of 7084 wild birds sampled by US federal and state agencies during December 2014–June 2015,
a total of 98 (1.4%) tested positive for HPAIV
68 dabbling ducks, 20 geese, 7 raptors, 2 passerines, and 1 diving duck (7).
...
by mid-June 2015, the virus had been found in 23 counties [in Minnesota] with confirmed cases
at 104 sites (98 turkey facilities, 5 chicken facilities, 1 backyard flock).
The outbreak resulted in the depopulation of 9 million birds (8) and an economic
loss of at least $650 million
...
Thus, we conclude that during the 2015 HPAIV (H5N2) outbreak in Minnesota poultry,
HPAIV contamination in wild waterfowl feces was not widespread.
...
[they can't figure out how it spreads]
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